Open miketaormina opened 1 year ago
@miketaormina, do we still want this? I could move this issue to the corresponding repository. At this point, this repo only generates the image stitching transformations and no longer generates neuroglancer links or fused data.
Please, refer to this link where we list all the repositories we're currently using in the SmartSPIM pipeline.
https://github.com/AllenNeuralDynamics/aind-smartspim-stitch/blob/2493c0b8759d84233346e98985e34092966270e1/code/aind_smartspim_stitch/terastitcher.py#L1005
In the neuroglancer Render tab, changing
#uicontrol invlerp normalized
to#uicontrol invlerp normalized(clamp=false)
~vastly~ improves image quality. Is it as simple as making the change here?Edit: the difference may be more subtle than I initially thought (my own NG ineptitude, haha). I do think it's better though.