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AllenNeuralDynamics / aind-smartspim-stitch

Stitching and fusion pipeline in the cloud
MIT License
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Neuroglancer clamps values to 8 bit #28

Open miketaormina opened 1 year ago

miketaormina commented 1 year ago

https://github.com/AllenNeuralDynamics/aind-smartspim-stitch/blob/2493c0b8759d84233346e98985e34092966270e1/code/aind_smartspim_stitch/terastitcher.py#L1005

In the neuroglancer Render tab, changing #uicontrol invlerp normalized to #uicontrol invlerp normalized(clamp=false) ~vastly~ improves image quality. Is it as simple as making the change here?

Edit: the difference may be more subtle than I initially thought (my own NG ineptitude, haha). I do think it's better though.

camilolaiton commented 7 months ago

@miketaormina, do we still want this? I could move this issue to the corresponding repository. At this point, this repo only generates the image stitching transformations and no longer generates neuroglancer links or fused data.

Please, refer to this link where we list all the repositories we're currently using in the SmartSPIM pipeline.