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AllenNeuralDynamics
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brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
BSD 3-Clause "New" or "Revised" License
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Auto-detect CO capsules and change data directory (or prompt user to attach data asset)
#17
dbirman
opened
2 weeks ago
1
merge down
#16
dbirman
opened
1 month ago
0
Split hemispheres and send to John (use vm and run BrainAtlas
#15
dbirman
closed
4 weeks ago
0
Add a function that can check whether an area crosses the midline
#14
dbirman
closed
2 weeks ago
1
feat: add direct access to leaf nodes from atlas.leaf_nodes
#13
dbirman
closed
1 month ago
0
feat: add a hemisphere flag to get_structure_mask
#12
dbirman
closed
1 month ago
0
Add parameter for masks by hemisphere
#11
dbirman
closed
1 month ago
0
Helper function to directly access leaf nodes
#10
dbirman
closed
1 month ago
0
feat: guarantee that config file exists at first import
#9
dbirman
closed
1 month ago
0
Sort out why config file doesn't exist on first run (maybe not triggered until you create a BrainGlobeAtlas obj?)
#8
dbirman
closed
1 month ago
0
Allow brainglobe directory to be set from an environment variable (for use on CO)
#7
dbirman
opened
1 month ago
0
3 codeocean asset + config
#6
dbirman
closed
1 month ago
0
feat: change compressed file prefix based on atlas
#5
dbirman
closed
1 month ago
0
Allow multiple downloads at once
#4
dbirman
closed
1 month ago
0
CodeOcean asset + config
#3
dbirman
closed
1 month ago
0
mirror BrainGlobe data on S3
#2
dbirman
closed
2 weeks ago
0
Extract ontology- and annotation-related methods from allensdk into its own package
#1
dbirman
closed
4 weeks ago
1