Python "Class"ification Refactor - Githubissues

AllenNeuralDynamics / exa-spim-control

Acquisition control for the exaSPIM microscope system

MIT License

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Python "Class"ification Refactor #14

Open Poofjunior opened 1 year ago

Poofjunior commented 1 year ago

This refactor should:

[x] imaris writer class should close without requiring arguments.
[ ] make an NI class of some form, maybe WaveformHardware
[ ] NI should close safely if opened in continuous mode.
[ ] have a sensible ao_name_to_channel mapping
[x] print out sensible waveforms in a pdf
[x] have config.py similarly written to config.py for the mesospim
[x] use the Spim base class for file management
[x] iterate through tiles, not steps.
[ ] consider moving volume to step calculations to the Spim base class
[x] be simulatable (memory resources can be adjusted via config)
[ ] minimize tile transformations
[x] handle remappable axes
[x] handle backlash
[x] do a time estimate
[x] run dataset size checks on storage locations