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AllenNeuralDynamics / exa-spim-control

Acquisition control for the exaSPIM microscope system
MIT License
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Dev/background image #44

Closed adamkglaser closed 10 months ago

adamkglaser commented 1 year ago

Adding ability to collect a background image. Inserted this as a function in the camera class. This seems like a function of the camera, rather than the microscope? But we can discuss if others disagree. The camera class returns a background image which is median filtered over N frames. This is saved as a tiled TIFF (per Cameron's request) within the exaspim.py file.

Adding anatomical axes to the config, which are logged in the schema.

Reordered and reorganized some schema logging statements to be more accurate/human readable.

adamkglaser commented 10 months ago

This looks OK to merge...