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AllenNeuralDynamics / spim-core

common features shared across Allen Institute SPIM systems
MIT License
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Dev/update folder naming #17

Closed adamkglaser closed 1 year ago

adamkglaser commented 1 year ago

Updates to folder naming. Input spim name into run() function. Impacted variables are:

self.cfg.local_storage_dir self.cfg.ext_storage_dir self.img_storage_dir

A cleaner way to do this would be to not insert the variable to run() but instead define it in the spim-core config?

adamkglaser commented 1 year ago

Being called here now. https://github.com/AllenNeuralDynamics/exaSpim-UI/blob/4eb0671f0b64bedc372780e044cdebea3dd0c474/widgets/volumeteric_acquisition.py#L105

Add instrument_type and instrument_id

Implement in run in spim_base