search

AllenSWDB / allenswdb.github.io

Other
3 stars 6 forks source link

Visual coding 2p section does not build correctly #10

Closed galenlynch closed 1 year ago

galenlynch commented 1 year ago

@saskiad 

/root/capsule/databook/visual-coding-2p/vc2p-cell-specimens-table.md: WARNING: Executing notebook failed: CellExecutionError [mystnb.exec]
/root/capsule/databook/visual-coding-2p/vc2p-cell-specimens-table.md: WARNING: Notebook exception traceback saved in: /root/capsule/scratch/_build/html/reports/visual-coding-2p/vc2p-cell-specimens-table.err.log [mystnb.exec]
/root/capsule/databook/visual-coding-2p/vc2p-dataset.md:203: WARNING: image file not readable: resources/VC2p-sessions.png
/root/capsule/databook/visual-coding-2p/vc2p-session-data.md: WARNING: Executing notebook failed: CellExecutionError [mystnb.exec]
/root/capsule/databook/visual-coding-2p/vc2p-session-data.md: WARNING: Notebook exception traceback saved in: /root/capsule/scratch/_build/html/reports/visual-coding-2p/vc2p-session-data.err.log [mystnb.exec]
saskiad commented 1 year ago

I think I fixed the cell execution error - can you confirm? I feel like I've gotten lost in the different PRs. It's a typo on "dataset"

galenlynch commented 1 year ago

It looks like the only thing missing is the image

/root/capsule/databook/visual-behavior/VBN-SessionData.md:169: WARNING: image file not readable: resources/dlc_eye_label_example.png
/root/capsule/databook/visual-coding-2p/vc2p-dataset.md:203: WARNING: image file not readable: resources/VC2p-sessions.png
looking for now-outdated files... none found
pickling environment... done
checking consistency... /root/capsule/databook/visual-behavior/VBN-Tutorial-Unit_Quality_Metrics.md: WARNING: document isn't included in any toctree
/root/capsule/databook/visual-coding-2p/vc2p-analysis.md: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [100%] visual-coding-2p/vc2p-dataset                                                                                                                                                 
/root/capsule/databook/background/Mouse-visual-system.md:39: WARNING: could not find bibtex key "adermann"
/root/capsule/databook/background/Neuropixels-electrophysiology.md:21: WARNING: term not in glossary: Spikes
/root/capsule/databook/background/Neuropixels-electrophysiology.md:27: WARNING: term not in glossary: Local Field Potentials (LFPs)
/root/capsule/databook/glossary.md:17: WARNING: term not in glossary: reporter
/root/capsule/databook/glossary.md:157: WARNING: term not in glossary: reporter
/root/capsule/databook/visual-coding-2p/vc2p-background.md:31: WARNING: 'myst' reference target not found: /vc2p-stimuli.md
/root/capsule/databook/visual-coding-2p/vc2p-dataset.md:39: WARNING: 'myst' reference target not found: ../background/Mouse-visual_system.md
/root/capsule/databook/visual-coding-2p/vc2p-dataset.md:115: WARNING: term not in glossary: Reporter
/root/capsule/databook/visual-coding-2p/vc2p-dataset.md:179: WARNING: term not in glossary: Reporter
generating indices... genindex done