VBO hopefully final updates

[matchings]

Fixed errors in 'compare trial types' tutorial, added more documentation, etc

[matchings]

@galenlynch it appears that "VBO-dataset.md" did not run, or at least the output of the code cells is not there in the build, and i am not sure why. Perhaps this is a holdover from when you set certain notebooks not to run because they had errors?

[matchings]

Here is the output of the most recent test build in my copy of the main databook capsule, in case it is useful:

building [mo]: targets for 0 po files that are out of date building [html]: targets for 60 source files that are out of date updating environment: [new config] 60 added, 0 changed, 0 removed /root/capsule/databook/cell-type-lookup-table/ctlut-accessing-data.md: Using cached notebook: ID=1 [mystnb]
/root/capsule/databook/cell-type-lookup-table/ctlut-identifying-tagged-units.md: Using cached notebook: ID=2 [mystnb]
/root/capsule/databook/cell-type-lookup-table/ctlut-optotagging.md: Using cached notebook: ID=3 [mystnb]
/root/capsule/databook/microns-em/em-background.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/em-caveclient-setup.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/em-coordinates.md: Using cached notebook: ID=5 [mystnb]
/root/capsule/databook/microns-em/em-dash-apps.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/em-functional_data.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/em-meshes.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/em-neuroglancer.md: Using cached notebook: ID=6 [mystnb]
/root/capsule/databook/microns-em/em-querying-tables.md: Using cached notebook: ID=7 [mystnb]
/root/capsule/databook/microns-em/em-skeletons.md: Using cached notebook: ID=8 [mystnb]
/root/capsule/databook/microns-em/em-structural-data.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/em-ultrastructure.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/em-volume-data.md: Using cached notebook: ID=9 [mystnb]
/root/capsule/databook/microns-em/key-tables.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/microns-em/proofreading.md: Using cached notebook: ID=4 [mystnb]
/root/capsule/databook/visual-behavior/VB-BehaviorSessionData.md: Using cached notebook: ID=29 [mystnb]
/root/capsule/databook/visual-behavior/VBN-Dataset.md: Using cached notebook: ID=10 [mystnb]
/root/capsule/databook/visual-behavior/VBN-SessionData.md: Using cached notebook: ID=11 [mystnb]
/root/capsule/databook/visual-behavior/VBN-Tutorial-Aligning_Behavior_Data_to_Task_Events.md: Using cached notebook: ID=35 [mystnb]
/root/capsule/databook/visual-behavior/VBN-Tutorial-Aligning_Neural_Data_to_Stimuli.md: Using cached notebook: ID=36 [mystnb]
/root/capsule/databook/visual-behavior/VBN-Tutorial-Analyzing_LFP_Data.md: Using cached notebook: ID=14 [mystnb]
/root/capsule/databook/visual-behavior/VBO-Dataset.md: Using cached notebook: ID=39 [mystnb]
/root/capsule/databook/visual-behavior/VBO-ExperimentData.md: Using cached notebook: ID=37 [mystnb]
/root/capsule/databook/visual-behavior/VBO-Tutorial-Compare_trial_types.md: Using cached notebook: ID=41 [mystnb]
/root/capsule/databook/visual-behavior/VBO-Tutorial-Downloading_data_and_exploring_the_manifest.md: Using cached notebook: ID=31 [mystnb] /root/capsule/databook/visual-coding-2p/vc2p-analysis.md: Using cached notebook: ID=32 [mystnb]
/root/capsule/databook/visual-coding-2p/vc2p-cross-session-data.md: Using cached notebook: ID=17 [mystnb]
/root/capsule/databook/visual-coding-2p/vc2p-dataset.md: Using cached notebook: ID=18 [mystnb]
/root/capsule/databook/visual-coding-2p/vc2p-evoked-response.md: Using cached notebook: ID=19 [mystnb]
/root/capsule/databook/visual-coding-2p/vc2p-session-data.md: Using cached notebook: ID=33 [mystnb]
/root/capsule/databook/visual-coding-2p/vc2p-stimuli.md: Using cached notebook: ID=20 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp.md: Using cached notebook: ID=21 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-data-access.md: Using cached notebook: ID=22 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-lfp.md: Using cached notebook: ID=23 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-links.md: Using cached notebook: ID=21 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-optotagging.md: Using cached notebook: ID=24 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-quality-metrics.md: Using cached notebook: ID=25 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-quickstart.md: Using cached notebook: ID=26 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-receptive-fields.md: Using cached notebook: ID=27 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-session.md: Using cached notebook: ID=38 [mystnb]
/root/capsule/databook/visual-coding-np/vcnp-units.md: Using cached notebook: ID=28 [mystnb]

/root/capsule/databook/glossary.md:84: WARNING: glossary terms must not be separated by empty lines looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [100%] visual-coding-np/vcnp-units
generating indices... genindex done writing additional pages... search done copying images... [100%] _build/jupyter_execute/c36b4886f35d4a8e9feeca26f17561cb665530b7932563919156cb112745285d.png
copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done [etoc] missing index.html written as redirect to 'intro.html' build succeeded, 1 warning.

The HTML pages are in databook/_build/html.

===============================================================================

Finished generating HTML for book. Your book's HTML pages are here: databook/_build/html/ You can look at your book by opening this file in a browser: databook/_build/html/index.html Or paste this line directly into your browser bar: file:///root/capsule/databook/_build/html/index.html

===============================================================================

[galenlynch]

I think it's building! I just forced the VBO-dataset to rebuild and it looks fine.