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Question about number of genes in experiment 1 #12

Closed Chibuikem709 closed 1 year ago

Chibuikem709 commented 1 year ago

Hello!

I was doing some exploratory data analysis on the data from experiment 1. I noticed that the number of genes in stateFate_inVitro_normed_counts.mtx differs from the number of genes listed in stateFate_inVitro_gene_names.txt by 1 (25289 vs 25288, respectively). Is this correct?

calebweinreb commented 1 year ago

stateFate_inVitro_gene_names.txt has 25289 genes (same as the expression matrix). I know that in other gene lists, there is often a blank line at the end (i.e. the file ends in \n), whereas that is not the case for our data. Could you be accidentally ignoring the final gene name?

Chibuikem709 commented 1 year ago

Yes! Thank you! That fixes the issue!!