Hey Alondra,
Great job on your final project! It looks like you made some big progress. The PCA result is really interesting!
You do not need to turn in anything more, but I just uploaded an edited .rmd file with some comments and edits.
(1) I removed the code that was printing out long dataframes when knitting the document
(2) I realized that your OCT heatmap wasn't working because you were missing geom_tile() from the ggplot function just for that chunk.
(3) I made a suggestion to save the segmented data as separate objects, make a function for reorganizing the data for heatmaps. That way, you only have to make a minor change in the ggplot function to make the heat map for each of them, instead of having a whole routine for each.
It was nice to have you in the class this semester. I hope it was helpful. Happy coding!
Hey Alondra, Great job on your final project! It looks like you made some big progress. The PCA result is really interesting! You do not need to turn in anything more, but I just uploaded an edited .rmd file with some comments and edits. (1) I removed the code that was printing out long dataframes when knitting the document (2) I realized that your OCT heatmap wasn't working because you were missing geom_tile() from the ggplot function just for that chunk. (3) I made a suggestion to save the segmented data as separate objects, make a function for reorganizing the data for heatmaps. That way, you only have to make a minor change in the ggplot function to make the heat map for each of them, instead of having a whole routine for each.
It was nice to have you in the class this semester. I hope it was helpful. Happy coding!
Dai