What steps will reproduce the problem?
1. Read in this NRG DOCR CCPN project. Other projects work fine.
What is the expected output? What do you see instead?
jd:stella/cingTmp/ cing -n 2kqt --initCcpn 2kqt --ipython
================================================================================
=================
=====
| CING: Common Interface for NMR structure Generation version 0.9 (r710)
AW,JFD,GWV 2004-2009 |
================================================================================
=================
=====
User: jd on: stella.cmbi.umcn.nl (darwin/32bit) at: Thu
Feb 25 10:35:41 2010
==> Importing data from Ccpn project "2kqt"
CING started at : Thu Feb 25 10:35:37 2010
CING stopped at : Thu Feb 25 10:35:42 2010
CING took : 5.213 s
Traceback (most recent call last):
File "/Users/jd/workspace35/cing/python/cing/main.py", line 793, in <module>
main()
File "/Users/jd/workspace35/cing/python/cing/main.py", line 647, in main
project.initCcpn(ccpnFolder=options.initCcpn)
File "/Users/jd/workspace35/cing/python/cing/PluginCode/Ccpn.py", line 2272, in initCcpn
if not ccpn.importFromCcpn(modelCount = modelCount):
File "/Users/jd/workspace35/cing/python/cing/PluginCode/Ccpn.py", line 331, in importFromCcpn
if not self.importFromCcpnMolecule(modelCount = modelCount):
File "/Users/jd/workspace35/cing/python/cing/PluginCode/Ccpn.py", line 409, in importFromCcpnMolecule
if not self._getCcpnNmrProject():
File "/Users/jd/workspace35/cing/python/cing/PluginCode/Ccpn.py", line 312, in _getCcpnNmrProject
self.ccpnNmrProject = ccpnNmrProject
UnboundLocalError: local variable 'ccpnNmrProject' referenced before assignment
In context:
if self.ccpnProject.currentNmrProject:
ccpnNmrProject = self.ccpnProject.currentNmrProject
elif self.ccpnProject.nmrProjects:
ccpnNmrProject = self.ccpnProject.findFirstNmrProject()
self.ccpnNmrProject = ccpnNmrProject
Analysis also fails to read the project with message:
Re-trying, skipping cached TopObjects:
Error during Exo link dereferencing. Object was: <ccp.molecule.MolSystem.Chain
['2kqt', 'E']>
values were: ['2kqt_user_2010-02-11-11-55-11-713_00001']
tag name was: molecule
Error loading file for: <ccp.molecule.MolSystem.MolSystem ['2kqt']>
Reading: <open file
'/Users/jd/tmp/cingTmp/2kqt/ccp/molecule/MolSystem/2kqt+2kqt_user_2010-02-11-11-
54-40-169_00001.xml', mode 'r' at
0x53c45c0>
Last xml tag read: _StorageUnit
Parser state was: postprocessing data
Object stack was empty
Original issue reported on code.google.com by jurge...@gmail.com on 25 Feb 2010 at 9:43
Original issue reported on code.google.com by
jurge...@gmail.com
on 25 Feb 2010 at 9:43