FC crashes on CS merging into CCPN file

[GoogleCodeExporter]

What steps will reproduce the problem?
1. Adding the CS to entry

What is the expected output? What do you see instead?
http://nmr.cmbi.ru.nl/NRG-CING/prep/S/po/1pon/1pon_starCS2Ccpn.log

...
# Matching NMR-STAR file to molSystem... 
Python nmrStar reader courtesy of Jurgen Doreleijers (BMRB) - with 
modifications added.
Parsing STAR file: 
/Users/jd/wattosTestingPlatform/bmrb/rsync/bmr3118/bmr3118_21.str
Done [75] subs with comment at beginning of line
Done [174] subs with comment not at beginning of line
Parsed: [10] datanodes (top level count only)
Traceback (most recent call last):
  File "/Users/jd/workspace35/cingStable/python/cing/Scripts/FC/mergeNrgBmrbShifts.py", line 144, in <module>
    MergeNrgBmrbShifts(sys.argv)
  File "/Users/jd/workspace35/ccpn/python/pdbe/adatah/Generic.py", line 89, in __init__
    self.catchError(raiseError,timeFlag)
  File "/Users/jd/workspace35/ccpn/python/pdbe/adatah/Generic.py", line 82, in __init__
    self.runSpecific()
  File "/Users/jd/workspace35/cingStable/python/cing/Scripts/FC/mergeNrgBmrbShifts.py", line 101, in runSpecific
    self.setBmrbNmrStarMapping(inputStarFile)
  File "/Users/jd/workspace35/ccpn/python/pdbe/adatah/NmrStar.py", line 317, in setBmrbNmrStarMapping
    if resLabelList[molCode][resLabelIndexStart][0] in pdbResLabels:
IndexError: list index out of range

Original issue reported on code.google.com by jurge...@gmail.com on 24 Feb 2011 at 8:06

[GoogleCodeExporter]

There's only two residues in the BMRB shift list (with only one shift value 
each). Anyway my code wasn't expecting something so short, fixed that now, 
check out in SF CVS:

pdbe.adatah.NmrStar

Original comment by wfvran...@gmail.com on 28 Feb 2011 at 9:50

[GoogleCodeExporter]

I got:
   Repository revision: 1.1.2.3 /cvsroot/ccpn/ccpn/python/pdbe/adatah/NmrStar.py,v
and:
Found fraction of at least   cutoff 0.05 at 1.00  overall (STAR/CING: 2/2)

Great!

Original comment by jurge...@gmail.com on 28 Feb 2011 at 10:26

• Changed state: Fixed
• Added labels: BMRB-3118