numpy 1.1.0 gives problem

GoogleCodeExporter commented 9 years ago

I updated my fink and ran in troubles. Numpy now is 1.1.0 and the current 
matplotlib is broken 
with this numpy version. So I installed 
matplotlib-0.91.3-py2.5-macosx-10.3-fat.egg and it 
solve one problem.

But then now I am having the same errors I was having with Linux:

Generating residue html pages for chain: A
0.........1....Traceback (most recent call last):
  File "/home/alan/cing/python/cing/main.py", line 513, in <module>
    main() # Just to get a name
  File "/home/alan/cing/python/cing/main.py", line 468, in main
    project.validate()
  File "/home/alan/cing/python/cing/PluginCode/validate.py", line 2491, in validate
    ranges=ranges
  File "/home/alan/cing/python/cing/PluginCode/validate.py", line 2098, in 
populateHtmlMolecules
    ps.hardcopy( fileName = os.path.join(resdir, plotDihedralComboName))
  File "/home/alan/cing/python/cing/Libs/NTplot.py", line 1200, in hardcopy
    savefig(fileName)
  File "/usr/lib/python2.5/site-packages/matplotlib/pyplot.py", line 269, in savefig
    return fig.savefig(*args, **kwargs)
  File "/usr/lib/python2.5/site-packages/matplotlib/figure.py", line 782, in savefig
    self.canvas.print_figure(*args, **kwargs)
  File "/usr/lib/python2.5/site-packages/matplotlib/backend_bases.py", line 1201, in 
print_figure
    self.figure.canvas.draw()
  File "/usr/lib/python2.5/site-packages/matplotlib/backends/backend_agg.py", line 358, in 
draw
    self.figure.draw(self.renderer)
  File "/usr/lib/python2.5/site-packages/matplotlib/figure.py", line 624, in draw
    for a in self.axes: a.draw(renderer)
  File "/usr/lib/python2.5/site-packages/matplotlib/axes.py", line 1345, in draw
    a.draw(renderer)
  File "/usr/lib/python2.5/site-packages/matplotlib/lines.py", line 533, in draw
    markerFunc(renderer, gc, xt, yt)
  File "/usr/lib/python2.5/site-packages/matplotlib/lines.py", line 802, in _draw_circle
    rgbFace = self._get_rgb_face()
  File "/usr/lib/python2.5/site-packages/matplotlib/lines.py", line 1306, in _get_rgb_face
    rgbFace = colorConverter.to_rgb(facecolor)
  File "/usr/lib/python2.5/site-packages/matplotlib/colors.py", line 279, in to_rgb
    raise ValueError('to_rgb: Invalid rgb arg "%s"\n%s' % (str(arg), exc))
ValueError: to_rgb: Invalid rgb arg "None"
cannot convert argument to rgb sequence

So I am quitting this upgrade and downgrade to my previous fink from backup.
I don't update my Fink for almost a month!

Jurgen, is your Fink up to date? Which versions of matplotlib and Numpy are you 
using?

I am currently using:
matplotlib-py25 0.90.1-1
numpy 1.0.4

Original issue reported on code.google.com by alanwil...@gmail.com on 10 Jul 2008 at 4:56

GoogleCodeExporter commented 9 years ago

Geerten did some mods on the numeric code I believe. Here's my install. Next 
week I'll set a new macbook for 
Geerten up with a complete CING, What If and all. Then I can update the install 
doc. Most packages I have 
listed below aren't needed for CING.

 i  64bit-cpu   0-1 [virtual package representing the 64bit capability of the CPU]
 i  aalib   1.4rc5-1024 Ascii art library
 i  aalib-bin   1.4rc5-1024 Ascii art library
 i  aalib-shlibs    1.4rc5-1024 Ascii art library
 i  ant-base    1.7.0-2 Java based build tool
 i  ant-junit   1.7.0-1 JUnit plugin for Ant
 i  antlr   2.7.7-1001  ANother Tool for Language Recognition (formerly PCCTS)
 i  app-defaults    20010814-12 Creates an app defaults directory for fink
 i  apt 0.5.4-1054  Advanced front-end for dpkg
 i  apt-shlibs  0.5.4-1054  Advanced front-end for dpkg
 i  arts    1.5.9-2 KDE - analog realtime synthesizer
 i  arts-dev    1.5.9-2 KDE - arts development headers and libraries
 i  arts-shlibs 1.5.9-2 KDE - arts shared libraries
 i  aspell  0.60.5-1003 Spell checker better than ispell
 i  aspell-dev  0.60.5-1003 Spell checker better than ispell
 i  aspell-shlibs   0.60.5-1003 Spell check better ispell - Shared libs
 i  atk1    1.12.4-2    Accessability Toolkit
 i  atk1-shlibs 1.12.4-2    Accessability Toolkit
 i  audiofile   0.2.6-11    Audio File Library *Developement Files*
 i  audiofile-bin   0.2.6-11    Audio File Library *Binaries*
 i  audiofile-shlibs    0.2.6-11    Audio File Library *Shared Libraries*
 i  automake1.9 1.9.6-4 Tool for generating GNU Standards-compliant Makefiles
 i  base-files  1.9.8-1 Directory infrastructure
 i  bison   2.3-1002    Parser generator
 i  bladeenc    0.94.2-3    LGPL'ed MP3 Encoder
 i  blt-dev 2.4z-14 Toolkit for tcl/tk
 i  blt-shlibs  2.4z-14 Toolkit for tcl/tk
 i  boost1.32-py24  1.32.0-1003 Portable Peer-review C++ Source Libraries
 i  boost1.32-py24-shlibs   1.32.0-1003 Boost C++ Shared Library Files
 i  bzip2   1.0.5-2 Block-sorting file compressor
 i  bzip2-dev   1.0.5-2 Developer files for bzip2 package
 i  bzip2-shlibs    1.0.5-2 Shared libraries for bzip2 package
 i  cctools 667-1   [virtual package representing the developer tools]
 i  cctools-single-module   667-1   [virtual package, your dev tools support -single_module]
 i  cups-dev    1.0306-1    [virtual package representing CUPS headers]
 i  cvs2svn-py25-bin    1.5.1-11    Binaries for cvs2svn (Python 2.5)
 i  cyrus-sasl2-dev 2.1.22-1001 Cyrus Simple Auth. and Security Layer Library
 i  cyrus-sasl2-shlibs  2.1.22-1001 Cyrus Simple Auth. and Security Layer Library
 i  darwin  9.4.0-1 [virtual package representing the kernel]
 i  db44-aes    4.4.20-1002 Berkeley DB embedded database - crypto
 i  db44-aes-shlibs 4.4.20-1002 Shared Libraries for db44-aes
 i  dbus-qt3-dev    0.70-1023   D-BUS Qt bindings
 i  dbus-qt3-shlibs 0.70-1023   Shared libraries for D-BUS Qt3 bindings
 i  debianutils 1.23-11 Misc. utilities specific to Debian (and Fink)
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 i  dev-tools   0-1 [virtual package representing developer commands]
 i  djbfft  0.76-3  Fast library for floating-point convolution
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 i  docbook-dtd 4.5.0-1 DocBook SGML/XML DTDs official releases
 i  docbook-utils   0.6.14-1006 Utilities for manipulating SGML and XML
 i  docbook-xsl 1.71.1-1    Norman Walsh's XSL DocBook stylesheets
 i  docutils-py25   0.4-7   Python-approved WYSIWYG text markup toolkit
 i  doxygen 1.4.6-1003  Documentation system for C++, Java, IDL and C
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 i  expat1  2.0.1-1 C library for parsing XML
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 i  ghostscript-fonts   8.11-3  Standard fonts for Ghostscript
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 i  giflib-bin  4.1.4-2 GIF image format handling library (LZW)
 i  giflib-shlibs   4.1.4-2 GIF image format handling library (LZW)
 i  gimp2   2.0.6-1006  The GNU Image Manipulation Program 2.0
 i  gimp2-shlibs    2.0.6-1006  The GNU Image Manipulation Program 2.0
 i  glib    1.2.10-51   Common C routines used by Gtk+ and other libs
 i  glib-shlibs 1.2.10-51   Common C routines used by Gtk+ and other libs
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 i  glib2-dev   2.12.12-14  Handy library of utility functions
 i  glib2-shlibs    2.12.12-14  Handy library of utility functions
 i  gmp 4.2.2-1001  GNU multiple precision arithmetic library
 i  gmp-shlibs  4.2.2-1001  Shared library for gmp package
 i  gnome-base  2.4.1-1 GNOME Removal convenience package
 i  gnome-icon-theme    2.16.0.1-1  The GNOME icon themes
 i  gnome-mime-data 2.4.3-1 The GNOME MIME database
 i  gnome-vfs2-ssl-dev  1:2.15.2-2  The GNOME virtual file-system libraries
 i  gnome-vfs2-ssl-shlibs   1:2.15.2-2  The GNOME virtual file-system libraries
 i  gnome-vfs2-unified-dev  1:2.15.2-2  The GNOME virtual file-system libraries
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 i  kdelibs3-unified-shlibs 3.5.9-2 KDE - essential shared libraries
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libcdparanoia.
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 i  libgnomeprint2.2-dev    2.12.1-1002 The GNOME printing library
 i  libgnomeprint2.2-shlibs 2.12.1-1002 The GNOME printing library
 i  libgnomeprintui2.2-dev  2.12.1-2    The GNOME printing library
 i  libgnomeprintui2.2-shlibs   2.12.1-2    The GNOME printing library
 i  libgsf-dev  1.10.1-1004 GNOME Structured File library
 i  libgsf-shlibs   1.10.1-1004 GNOME Structured File library
 i  libhowl-dev 1.0.0-17    Cross-platform implementation of Zeroconf
 i  libhowl-shlibs  1.0.0-17    Cross-platform implementation of Zeroconf
 i  libiconv    1.12-3  Character set conversion library
 i  libiconv-bin    1.12-3  Executables for libiconv package
 i  libiconv-dev    1.12-3  Developer files for libiconv package
 i  libidl2 0.8.8-1 IDL parsing library
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 i  libidn  1.6-1   Internationalized domain names
 i  libidn-shlibs   1.6-1   Shared libraries for libidn
 i  libjpeg 6b-17   JPEG image format handling library
 i  libjpeg-bin 6b-17   Executables for libjpeg package
 i  libjpeg-shlibs  6b-17   Shared libraries for libjpeg package
 i  libkpathsea4    3.5.6-1 Path search library for TeX
 i  libkpathsea4-shlibs 3.5.6-1 Shared libraries of path search library for TeX
 i  libmad  0.15.1b-5   MPEG audio decoder library
 i  libmad-shlibs   0.15.1b-5   MPEG audio decoder library
 i  libmng2 1.0.9-10    MNG Library, the animation extension to PNG
 i  libmng2-shlibs  1.0.9-10    MNG Library, the animation extension to PNG
 i  libmpeg 1.3.1-7 Gimp MPEG library
 i  libmpeg-shlibs  1.3.1-7 Gimp MPEG library
 i  libncurses5 5.4-20041023-1010   Full-screen ascii drawing library
 i  libncurses5-shlibs  5.4-20041023-1010   Shared libraries for libncurses5 package
 i  libncursesw5    5.4-20041023-1001   Full-screen ascii drawing library (wchar version)
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 i  libogg-shlibs   1.1.3-1 Ogg bitstream shared libraries
 i  liboil-0.3  0.3.12-1    CPU optimization library
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 i  libpaper1-shlibs    1.1.21-2    Shared libraries for libpaper
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 i  librsvg2-shlibs 2.9.5-11    SAX-based render library for SVG files
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 i  lynx    2.8.5-3 Console based web browser
 i  macosx  10.5.4-1    [virtual package representing the system]
 i  make    3.81-2  Software build tool
 i  matplotlib-basemap-py25 0.9.5-1 Plot data on map projections with matplotlib
 i  mysql-python-py25   1.2.2-1001  Python interface to MySQL
 i  mysql15-dev 5.0.38-1003 Open Source SQL database - Development headers and libraries
 i  mysql15-shlibs  5.0.38-1003 Open Source SQL database - Shared libraries
 i  ncurses 5.4-20041023-1010   Executable files for ncurses
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4.3)
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 i  pcre-bin    7.7-102 Perl Compatible Regular Expressions Library
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 i  readline5-shlibs    5.0-1005    Comfortable terminal input library
 i  remap-bad-apple-keys    1.0-1   A utility to remap some bad keys in Apple's X11
 i  scrollkeeper    0.3.14-8    Cataloging system for documentation
 i  setuptools-py25 0.6c8-1 EasyInstall and python eggs
 i  sgml-entities-iso8879   1986-4  SGML standard (ISO 8879) entity sets for special characters
 i  sgmls-pm    1.03ii-1003 Perl lib for use with the onsgmls parser
 i  soundkonverter  0.3.8-1002  KDE - Frontend for various audio transcoding tools
 i  sqlite3-dev 3.4.2-1001  Embedded SQL database (include files and linkable libraries)
 i  sqlite3-shlibs  3.4.2-1001  Embedded SQL database (shared libraries)
 i  svn 1.4.6-11    Subversion - svnserve, tools
 i  svn-client  1.4.6-11    Subversion - Client
 i  svn-dev 1.4.6-11    Subversion - Development headers and libs
 i  svn-shlibs  1.4.6-11    Subversion - Shared libraries
 i  svn-swig-py25   1.4.6-11    Subversion - Swig Python 2.5 bindings
 i  svn-swig-py25-shlibs    1.4.6-11    Subversion - Swig Python Shared libraries
 i  system-java 1.6.0-1 [virtual package representing Java 1.6.0]
 i  system-java-dev 1.6.0-1 [virtual package representing Java SDK 1.6.0]
 i  system-java14   1.4.2-1 [virtual package representing Java 1.4.2]
 i  system-java14-dev   1.4.2-1 [virtual package representing Java 1.4.2 development headers]
 i  system-java15   1.5.0-1 [virtual package representing Java 1.5.0]
 i  system-java15-dev   1.5.0-1 [virtual package representing Java 1.5.0 development headers]
 i  system-java16   1.6.0-1 [virtual package representing Java 1.6.0]
 i  system-java16-dev   1.6.0-1 [virtual package representing Java 1.6.0 development headers]
 i  system-java3d   0-1 [virtual package representing Java3D]
 i  system-javaai   0-1 [virtual package representing Java Advanced Imaging]
 i  system-openssl-dev  0.9.7-6 Placeholder to force the use of the system SSL
 i  system-perl 5.8.8-1 [virtual package representing perl]
 i  system-pkgconfig-applewm    1.0.0-1 [virtual pkgconfig package representing applewm]
 i  system-pkgconfig-applewmproto   1.0.3-1 [virtual pkgconfig package representing applewmproto]
 i  system-pkgconfig-apr-1  1.2.7-1 [virtual pkgconfig package representing apr-1]
 i  system-pkgconfig-apr-util-1 1.2.7-1 [virtual pkgconfig package representing apr-util-1]
 i  system-pkgconfig-bigreqsproto   1.0.2-1 [virtual pkgconfig package representing bigreqsproto]
 i  system-pkgconfig-compositeproto 0.4-1   [virtual pkgconfig package representing compositeproto]
 i  system-pkgconfig-damageproto    1.1.0-1 [virtual pkgconfig package representing damageproto]
 i  system-pkgconfig-dmx    1.0.2-1 [virtual pkgconfig package representing dmx]
 i  system-pkgconfig-dmxproto   2.2.2-1 [virtual pkgconfig package representing dmxproto]
 i  system-pkgconfig-evieproto  1.0.2-1 [virtual pkgconfig package representing evieproto]
 i  system-pkgconfig-fixesproto 4.0-1   [virtual pkgconfig package representing fixesproto]
 i  system-pkgconfig-fontcacheproto 0.1.2-1 [virtual pkgconfig package representing fontcacheproto]
 i  system-pkgconfig-fontconfig 2.4.1-1 [virtual pkgconfig package representing fontconfig]
 i  system-pkgconfig-fontenc    1.0.4-1 [virtual pkgconfig package representing fontenc]
 i  system-pkgconfig-fontsproto 2.0.2-1 [virtual pkgconfig package representing fontsproto]
 i  system-pkgconfig-fontutil   1.0.1-1 [virtual pkgconfig package representing fontutil]
 i  system-pkgconfig-freetype2  9.16.3-1    [virtual pkgconfig package representing freetype2]
 i  system-pkgconfig-glproto    1.4.8-1 [virtual pkgconfig package representing glproto]
 i  system-pkgconfig-ice    1.0.3-1 [virtual pkgconfig package representing ice]
 i  system-pkgconfig-inputproto 1.4.2.1-1   [virtual pkgconfig package representing inputproto]
 i  system-pkgconfig-kbproto    1.0.3-1 [virtual pkgconfig package representing kbproto]
 i  system-pkgconfig-lbxutil    1.0.1-1 [virtual pkgconfig package representing lbxutil]
 i  system-pkgconfig-libcurl    7.16.3-1    [virtual pkgconfig package representing libcurl]
 i  system-pkgconfig-libexslt   0.8.10-1    [virtual pkgconfig package representing libexslt]
 i  system-pkgconfig-libfs  1.0.0-1 [virtual pkgconfig package representing libfs]
 i  system-pkgconfig-libiodbc   3.52.5-1    [virtual pkgconfig package representing libiodbc]
 i  system-pkgconfig-libpng 1.2.24-1    [virtual pkgconfig package representing libpng]
 i  system-pkgconfig-libpng12   1.2.24-1    [virtual pkgconfig package representing libpng12]
 i  system-pkgconfig-libxml-2.0 2.6.16-1    [virtual pkgconfig package representing libxml-2.0]
 i  system-pkgconfig-libxslt    1.1.12-1    [virtual pkgconfig package representing libxslt]
 i  system-pkgconfig-oldx   1.0.1-1 [virtual pkgconfig package representing oldx]
 i  system-pkgconfig-openssl    0.9.7l-1    [virtual pkgconfig package representing openssl]
 i  system-pkgconfig-printproto 1.0.3-1 [virtual pkgconfig package representing printproto]
 i  system-pkgconfig-pthread-stubs  0.1-1   [virtual pkgconfig package representing pthread-stubs]
 i  system-pkgconfig-randrproto 1.2.1-1 [virtual pkgconfig package representing randrproto]
 i  system-pkgconfig-recordproto    1.13.2-1    [virtual pkgconfig package representing recordproto]
 i  system-pkgconfig-renderproto    0.9.3-1 [virtual pkgconfig package representing renderproto]
 i  system-pkgconfig-resourceproto  1.0.2-1 [virtual pkgconfig package representing resourceproto]
 i  system-pkgconfig-scrnsaverproto 1.1.0-1 [virtual pkgconfig package representing scrnsaverproto]
 i  system-pkgconfig-sm 1.0.2-1 [virtual pkgconfig package representing sm]
 i  system-pkgconfig-trapproto  3.4.3-1 [virtual pkgconfig package representing trapproto]
 i  system-pkgconfig-videoproto 2.2.2-1 [virtual pkgconfig package representing videoproto]
 i  system-pkgconfig-x11    1.1.3-1 [virtual pkgconfig package representing x11]
 i  system-pkgconfig-xau    1.0.3-1 [virtual pkgconfig package representing xau]
 i  system-pkgconfig-xaw6   1.0.2-1 [virtual pkgconfig package representing xaw6]
 i  system-pkgconfig-xaw7   1.0.2-1 [virtual pkgconfig package representing xaw7]
 i  system-pkgconfig-xaw8   1.0.2-1 [virtual pkgconfig package representing xaw8]
 i  system-pkgconfig-xbitmaps   1.0.1-1 [virtual pkgconfig package representing xbitmaps]
 i  system-pkgconfig-xcb    1.0-1   [virtual pkgconfig package representing xcb]
 i  system-pkgconfig-xcb-composite  1.0-1   [virtual pkgconfig package representing xcb-composite]
 i  system-pkgconfig-xcb-damage 1.0-1   [virtual pkgconfig package representing xcb-damage]
 i  system-pkgconfig-xcb-dpms   1.0-1   [virtual pkgconfig package representing xcb-dpms]
 i  system-pkgconfig-xcb-glx    1.0-1   [virtual pkgconfig package representing xcb-glx]
 i  system-pkgconfig-xcb-proto  1.0-1   [virtual pkgconfig package representing xcb-proto]
 i  system-pkgconfig-xcb-randr  1.0-1   [virtual pkgconfig package representing xcb-randr]
 i  system-pkgconfig-xcb-record 1.0-1   [virtual pkgconfig package representing xcb-record]
 i  system-pkgconfig-xcb-render 1.0-1   [virtual pkgconfig package representing xcb-render]
 i  system-pkgconfig-xcb-res    1.0-1   [virtual pkgconfig package representing xcb-res]
 i  system-pkgconfig-xcb-screensaver    1.0-1   [virtual pkgconfig package representing xcb-
screensaver]
 i  system-pkgconfig-xcb-shape  1.0-1   [virtual pkgconfig package representing xcb-shape]
 i  system-pkgconfig-xcb-shm    1.0-1   [virtual pkgconfig package representing xcb-shm]
 i  system-pkgconfig-xcb-sync   1.0-1   [virtual pkgconfig package representing xcb-sync]
 i  system-pkgconfig-xcb-xevie  1.0-1   [virtual pkgconfig package representing xcb-xevie]
 i  system-pkgconfig-xcb-xf86dri    1.0-1   [virtual pkgconfig package representing xcb-xf86dri]
 i  system-pkgconfig-xcb-xfixes 1.0-1   [virtual pkgconfig package representing xcb-xfixes]
 i  system-pkgconfig-xcb-xinerama   0.9.92-1    [virtual pkgconfig package representing xcb-xinerama]
 i  system-pkgconfig-xcb-xlib   1.0-1   [virtual pkgconfig package representing xcb-xlib]
 i  system-pkgconfig-xcb-xprint 1.0-1   [virtual pkgconfig package representing xcb-xprint]
 i  system-pkgconfig-xcb-xtest  1.0-1   [virtual pkgconfig package representing xcb-xtest]
 i  system-pkgconfig-xcb-xv 1.0-1   [virtual pkgconfig package representing xcb-xv]
 i  system-pkgconfig-xcb-xvmc   1.0-1   [virtual pkgconfig package representing xcb-xvmc]
 i  system-pkgconfig-xcmiscproto    1.1.2-1 [virtual pkgconfig package representing xcmiscproto]
 i  system-pkgconfig-xcomposite 0.4.0-1 [virtual pkgconfig package representing xcomposite]
 i  system-pkgconfig-xcursor    1.1.8-1 [virtual pkgconfig package representing xcursor]
 i  system-pkgconfig-xdamage    1.0.4-1 [virtual pkgconfig package representing xdamage]
 i  system-pkgconfig-xdmcp  1.0.2-1 [virtual pkgconfig package representing xdmcp]
 i  system-pkgconfig-xevie  1.0.2-1 [virtual pkgconfig package representing xevie]
 i  system-pkgconfig-xext   1.0.2-1 [virtual pkgconfig package representing xext]
 i  system-pkgconfig-xextproto  7.0.2-1 [virtual pkgconfig package representing xextproto]
 i  system-pkgconfig-xf86dgaproto   2.0.2-1 [virtual pkgconfig package representing xf86dgaproto]
 i  system-pkgconfig-xf86driproto   2.0.3-1 [virtual pkgconfig package representing xf86driproto]
 i  system-pkgconfig-xf86miscproto  0.9.2-1 [virtual pkgconfig package representing xf86miscproto]
 i  system-pkgconfig-xf86vidmodeproto   2.2.2-1 [virtual pkgconfig package representing 
xf86vidmodeproto]
 i  system-pkgconfig-xfixes 4.0.3-1 [virtual pkgconfig package representing xfixes]
 i  system-pkgconfig-xfont  1.3.0-1 [virtual pkgconfig package representing xfont]
 i  system-pkgconfig-xfontcache 1.0.4-1 [virtual pkgconfig package representing xfontcache]
 i  system-pkgconfig-xft    2.1.12-1    [virtual pkgconfig package representing xft]
 i  system-pkgconfig-xi 1.0.2-1 [virtual pkgconfig package representing xi]
 i  system-pkgconfig-xinerama   1.0.1-1 [virtual pkgconfig package representing xinerama]
 i  system-pkgconfig-xineramaproto  1.1.2-1 [virtual pkgconfig package representing xineramaproto]
 i  system-pkgconfig-xkbfile    1.0.4-1 [virtual pkgconfig package representing xkbfile]
 i  system-pkgconfig-xkbui  1.0.2-1 [virtual pkgconfig package representing xkbui]
 i  system-pkgconfig-xmu    1.0.3-1 [virtual pkgconfig package representing xmu]
 i  system-pkgconfig-xmuu   1.0.3-1 [virtual pkgconfig package representing xmuu]
 i  system-pkgconfig-xorg-server    1.3.0-apple5-1  [virtual pkgconfig package representing xorg-
server]
 i  system-pkgconfig-xp 1.0.0-1 [virtual pkgconfig package representing xp]
 i  system-pkgconfig-xpm    3.5.6-1 [virtual pkgconfig package representing xpm]
 i  system-pkgconfig-xprintapputil  1.0.1-1 [virtual pkgconfig package representing xprintapputil]
 i  system-pkgconfig-xprintutil 1.0.1-1 [virtual pkgconfig package representing xprintutil]
 i  system-pkgconfig-xproto 7.0.11-1    [virtual pkgconfig package representing xproto]
 i  system-pkgconfig-xproxymngproto 1.0.2-1 [virtual pkgconfig package representing 
xproxymngproto]
 i  system-pkgconfig-xrandr 1.2.2-1 [virtual pkgconfig package representing xrandr]
 i  system-pkgconfig-xrender    0.9.2-1 [virtual pkgconfig package representing xrender]
 i  system-pkgconfig-xres   1.0.3-1 [virtual pkgconfig package representing xres]
 i  system-pkgconfig-xscrnsaver 1.1.2-1 [virtual pkgconfig package representing xscrnsaver]
 i  system-pkgconfig-xt 1.0.4-1 [virtual pkgconfig package representing xt]
 i  system-pkgconfig-xtrans 1.0.4-1 [virtual pkgconfig package representing xtrans]
 i  system-pkgconfig-xtrap  1.0.0-1 [virtual pkgconfig package representing xtrap]
 i  system-pkgconfig-xtst   1.0.1-1 [virtual pkgconfig package representing xtst]
 i  system-pkgconfig-xv 1.0.3-1 [virtual pkgconfig package representing xv]
 i  system-pkgconfig-xvmc   1.0.4-1 [virtual pkgconfig package representing xvmc]
 i  system-pkgconfig-xxf86misc  1.0.1-1 [virtual pkgconfig package representing xxf86misc]
 i  system-pkgconfig-xxf86vm    1.0.1-1 [virtual pkgconfig package representing xxf86vm]
 i  system-sdk-10.4-universal   10.4-1  [virtual package representing the Mac OS X 10.4 Universal SDK]
 i  system-sdk-10.5 10.5-1  [virtual package representing the Mac OS X 10.5 SDK]
 i  system-xfree86  2:7.2-2 [placeholder for user installed x11]
 i  system-xfree86-dev  2:7.2-2 [placeholder for user installed x11 development tools]
 i  system-xfree86-manual-install   2:7.2-2 Manually installed X11 components
 i  system-xfree86-shlibs   2:7.2-2 [placeholder for user installed x11 shared libraries]
 i  taglib  1.4-1023    Audio meta-data library
 i  taglib-shlibs   1.4-1023    Shared libraries for the taglib meta-data library
 i  tar 1.16.1-1    GNU tar - tape archiver
 i  tetex-base  3.0-1005    Base programs for a teTeX installation
 i  tetex-texmf 3.0-1   Main texmf tree for a teTeX installation
 i  texi2html   1.64-16 Converts texinfo documents to HTML
 i  unsermake   0.4-0.20070824.2    Replacement for automake
 i  unzip   5.52-12 Decompression compatible with pkunzip
 i  xcode   3.0-1   [virtual package representing the developer tools]
 i  xdg-base    0.6-2   Env vars for the Freedesktop basedir spec
 i  xmkmf   1.0.2-1002  X11 legacy build tools
 i  xml-namespacesupport-pm 1.08-1  Perlmods for supporting generic namespaces
 i  xml-parser-pm588    2.34-15 Perl ext interface to XML parser/expat
 i  xml-sax-expat-pm588 0.38-1  Perl module, SAX2 Driver for Expat

Original comment by jurge...@gmail.com on 10 Jul 2008 at 5:51

GoogleCodeExporter commented 9 years ago

Would it help if you had ssh access to nmr.cmbi.ru.nl on which we also have a 
full CING for the new server to 
come?

Original comment by jurge...@gmail.com on 10 Jul 2008 at 5:52

GoogleCodeExporter commented 9 years ago

Well, it'd help. Is it a Mac?

So, the problem is solved by setting 'markerfacecolor' to 'none'

So, in NTplot.py, line 550:
               # AWSS: for matplotlib 0.91.3 , None is not acceptable anymore.
               result['markerfacecolor'] =  'none' #None # it might have been set above.

from matplotlib.pylab import *
import matplotlib, numpy
print matplotlib.__version, numpy.__version__
att1 = {'color': 'black', 'markerfacecolor': 'red', 'markersize':
80.0, 'markeredgewidth': 1.0, 'alpha': 1.0, 'marker': 's',
'markeredgecolor': 'blue'}
att2 = {'color': 'black', 'markerfacecolor': 'none', 'markersize': 8.0,
'markeredgewidth': 1.0, 'alpha': 1.0, 'marker': 'o',
'markeredgecolor': 'blue'}
plot([0],[0], **att1)
plot([0],[0], **att2)
show()

Original comment by alanwil...@gmail.com on 12 Jul 2008 at 8:40

Changed state: Fixed

GoogleCodeExporter commented 9 years ago

It's a mac mini. I could create an account alan for you on it.
The pass word can then be in your skype text window.
I might be able to do that on Wed.

Original comment by jurge...@gmail.com on 13 Jul 2008 at 5:07

AlphaBetaTest / cing

numpy 1.1.0 gives problem #91