Rename the -esterrors and -estmaf

AlphaGenes / AlphaPeel

AlphaPeel: calling, phasing, and imputing genotype and sequence data in pedigrees

MIT License

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Rename the -esterrors and -estmaf #104

Closed gregorgorjanc closed 9 months ago

gregorgorjanc commented 1 year ago

Currently we have -esterrors and -estmaf to estimate genotyping error rate/prob and alternative allele rate/freq/prob. In line with https://github.com/AlphaGenes/AlphaPeel/issues/97 we should use

[ ] -est_geno_error_prob
[ ] -est_alt_allele_prob

possibly later also

[ ] -est_rec_prob
[ ] -est_seq_error_prob

gregorgorjanc commented 9 months ago

Closing as completed.