AlphaGenes / AlphaPeel

AlphaPeel: calling, phasing, and imputing genotype and sequence data in pedigrees

MIT License

2 stars 11 forks source link

Develop functional tests for alt_allele_prob_file and est_alt_allele_prob with multiple metafounders #156

Closed XingerTang closed 3 weeks ago

XingerTang commented 5 months ago

150

Since the main code is not updated, the test will fail.

There is some redundant/repetitive code in test_alt_allele_prob, it will be re-organized once the main code is done.

gregorgorjanc commented 5 months ago

@XingerTang I looked at these additions, but I am struggling a bit how the different input files come together what should happen and what should be the correct result and hence assert test.

Can we meet at some point and discuss how to make these tests a bit more readable - maybe you just need to teach me what to look for;)

XingerTang commented 5 months ago

@gregorgorjanc Sure :)

gregorgorjanc commented 3 weeks ago

Looks good so merging this in.