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Altius / hotspot2

Implementation of hotspot2 by Eric Rynes
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Bug in density file #21

Closed sjneph closed 7 years ago

sjneph commented 7 years ago

Eric pointed out the following mistake on line 48 of density-peaks.bash: bedmap --faster --sweep-all --chrom "$chr" --range "$rangepad" --delim "\t" --echo --echo-ref-row-id --count - "$tags"

--count should be changed to --sum for consistency with what we've always done when calculating densities.

fwip commented 7 years ago

Fixed by 61d2de9f, will be in 1.1 release.