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Altius / hotspot2

Implementation of hotspot2 by Eric Rynes
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error when no fragments file is created #5

Closed sjneph closed 8 years ago

sjneph commented 8 years ago

When given a bam file with tlen <= 0 there is no fragments file created and things fail downstream.

sjneph commented 8 years ago

downstream operations use cutcounts instead of fragments.