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AmphibiaWeb / amphibian-disease-tracker

Amphibian Disease Tracker Portal
GNU General Public License v3.0
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Posthoc data upload doesn't save all parsed information correctly #300

Open tigerhawkvok opened 6 years ago

tigerhawkvok commented 6 years ago

In particular, note sample_field_numbers.

{
  "status": true,
  "data": {
    "project_title": "Posthoc data upload test",
    "reference_id": "",
    "disease": "Batrachochytrium dendrobatidis",
    "disease_strain": "",
    "disease_samples": 76,
    "disease_positive": 0,
    "disease_negative": 76,
    "disease_no_confidence": 0,
    "disease_morbidity": 0,
    "disease_mortality": 0,
    "sample_method": "",
    "includes_anura": true,
    "includes_caudata": false,
    "includes_gymnophiona": false,
    "sampled_species": "Alytes obstetricans",
    "sampled_clades": "Alytidae",
    "sampled_species_data": "",
    "sampled_collection_start": 1465862400000,
    "sampled_collection_end": 1503792000000,
    "sampling_months": "August,July,June,May",
    "sampling_years": "2016,2017",
    "sample_methods_used": "external Swab",
    "sample_dispositions_used": "",
    "sample_catalog_numbers": "",
    "sample_field_numbers": ",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,",
    "sample_notes": "",
    "locality": "Mill St, Cambridge CB1 2HP, UK",
    "sample_raw_data": "https://amphibiandisease.org/helpers/js-dragdrop/uploaded/2af82333fc5b1c1906365d5bd1e89bf0/cd26aa75610660ca249ae9638b6dfcbf.xlsx",
    "lat": 52.200039,
    "lng": 0.13544887,
    "bounding_box_n": 52.200039,
    "bounding_box_e": 0.13544887,
    "bounding_box_w": 0.13544887,
    "bounding_box_s": 52.200039,
    "radius": 7,
    "transect_file": "",
    "author": "6d6d454828c05e8ceea03c99cc5f547e52fcb5fb",
    "author_data": "{\"entry_date\":\"1537394971990\",\"name\":\"Philip Kahn\",\"contact_email\":\"tigerhawkvok@gmail.com\",\"diagnostic_lab\":\"asd\",\"affiliation\":\"asd\"}",
    "pi_lab": "asdf",
    "publication": "",
    "carto_id": "{\"table\":\"t45d9ec269101c6199467e9235c75f808_6d6d454828c05e8ceea03c99cc5f547e52fcb5fb\",\"raw_data\":{\"hasDataFile\":true,\"fileName\":\"cd26aa75610660ca249ae9638b6dfcbf.xlsx\",\"filePath\":\"helpers/js-dragdrop/uploaded/2af82333fc5b1c1906365d5bd1e89bf0/cd26aa75610660ca249ae9638b6dfcbf.xlsx\"},\"bounding_polygon\":[{\"lat\":52.200039,\"lng\":0.13544887000000472},{\"lat\":52.200039,\"lng\":0.13544887000000472}]}",
    "public": false,
    "more_analysis_funding_request": "0",
    "extended_funding_reach_goals": "",
    "dataset_arks": "ark:/21547/Bbu2::cd26aa75610660ca249ae9638b6dfcbf.xlsx",
    "project_dir_identifier": "2af82333fc5b1c1906365d5bd1e89bf0",
    "technical_contact": "Philip Kahn",
    "technical_contact_email": "tigerhawkvok@gmail.com",
    "modified": 1537395062.502
  },
  "project": {
    "status": true,
    "error": null,
    "human_error": null,
    "project": {
      "id": "103",
      "project_id": "21915a754da9622b8eb8015c0cf75926",
      "project_title": "Posthoc data upload test",
      "reference_id": "",
      "disease": "Batrachochytrium dendrobatidis",
      "disease_strain": "",
      "disease_samples": "76",
      "disease_positive": "0",
      "disease_negative": "76",
      "disease_no_confidence": "0",
      "disease_morbidity": "0",
      "disease_mortality": "0",
      "sample_method": "",
      "includes_anura": true,
      "includes_caudata": false,
      "includes_gymnophiona": false,
      "sampled_species": "Alytes obstetricans",
      "sampled_clades": "Alytidae",
      "sampled_species_data": "",
      "sampled_collection_start": "1.46586e+12",
      "sampled_collection_end": "1.50379e+12",
      "sampling_months": "August,July,June,May",
      "sampling_years": "2016,2017",
      "sample_methods_used": "external Swab",
      "sample_dispositions_used": "",
      "sample_catalog_numbers": "",
      "sample_field_numbers": ",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,",
      "sample_notes": "",
      "locality": "Mill St, Cambridge CB1 2HP, UK",
      "sample_raw_data": "https://amphibiandisease.org/helpers/js-dragdrop/uploaded/2af82333fc5b1c1906365d5bd1e89bf0/cd26aa75610660ca249ae9638b6dfcbf.xlsx",
      "lat": "52.200039",
      "lng": "0.13544887",
      "bounding_box_n": "52.200039",
      "bounding_box_e": "0.13544887",
      "bounding_box_w": "0.13544887",
      "bounding_box_s": "52.200039",
      "radius": "7",
      "transect_file": "",
      "author": "6d6d454828c05e8ceea03c99cc5f547e52fcb5fb",
      "author_data": "{\"entry_date\":\"1537394971990\",\"name\":\"Philip Kahn\",\"contact_email\":\"tigerhawkvok@gmail.com\",\"diagnostic_lab\":\"asd\",\"affiliation\":\"asd\"}",
      "access_data": "",
      "pi_lab": "asdf",
      "publication": "",
      "carto_id": "{\"table\":\"t45d9ec269101c6199467e9235c75f808_6d6d454828c05e8ceea03c99cc5f547e52fcb5fb\",\"raw_data\":{\"hasDataFile\":true,\"fileName\":\"cd26aa75610660ca249ae9638b6dfcbf.xlsx\",\"filePath\":\"helpers/js-dragdrop/uploaded/2af82333fc5b1c1906365d5bd1e89bf0/cd26aa75610660ca249ae9638b6dfcbf.xlsx\"},\"bounding_polygon\":[{\"lat\":52.200039,\"lng\":0.13544887000000472},{\"lat\":52.200039,\"lng\":0.13544887000000472}]}",
      "public": false,
      "more_analysis_funding_request": "0",
      "extended_funding_reach_goals": "",
      "project_obj_id": "ark:/21547/Bbq2",
      "dataset_arks": "ark:/21547/Bbu2::cd26aa75610660ca249ae9638b6dfcbf.xlsx",
      "project_dir_identifier": "2af82333fc5b1c1906365d5bd1e89bf0",
      "technical_contact": "Philip Kahn",
      "technical_contact_email": "tigerhawkvok@gmail.com",
      "modified": 1537395070.404
    },
    "user": {
      "user": "6d6d454828c05e8ceea03c99cc5f547e52fcb5fb",
      "has_edit_permissions": true,
      "has_view_permissions": true,
      "is_author": true
    },
    "project_id": "21915a754da9622b8eb8015c0cf75926",
    "project_id_raw": "2"
  },
  "execution_time": 14.648914337158
}