AmpliconSuite / AmpliconClassifier

Classify output of AmpliconArchitect to detect types of focal amplifications present
BSD 2-Clause "Simplified" License
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complexity scores #11

Closed alhafidzhamdan closed 2 years ago

alhafidzhamdan commented 2 years ago

Hi @jluebeck,

Saw your biorxiv paper recently https://www.biorxiv.org/content/10.1101/2022.07.25.501144v1.full.pdf#page=10&zoom=auto,-271,691 ; congrats!

I was wondering which column should one take as the "complexity score" from AmpliconClassifier output's *feature_entropy.tsv file? Is it the "total_feature_entropy" ? Or does one have to do some additional summation?

Thanks Al

jluebeck commented 2 years ago

Hi Al,

Thanks for the query - I just updated the documentation in 9e1a175 to provide additional descriptions of the output files. Please let me know if you have additional questions.

Jens

alhafidzhamdan commented 2 years ago

Got it- thanks!