how to compare with CIRCLE-seq

AmpliconSuite / AmpliconClassifier

Classify output of AmpliconArchitect to detect types of focal amplifications present

BSD 2-Clause "Simplified" License

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how to compare with CIRCLE-seq #5

Closed panxiaoguang closed 3 years ago

panxiaoguang commented 3 years ago

after running AA and AC,I konw I got some amplication with eccDNA. However, in fact, a cycle defined in one amplicon of AA may contain multiple segments. However, when we run Circle-Map on CIRCLE-seq data, we usually get a self closed cycle with only one segment. What data should I use to compare with the circleseq data?

jluebeck commented 3 years ago

This is a very hard question for me to answer without seeing the data itself, sorry. Please feel free to email me if you would like to discuss further.

Best regards, Jens