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AmpliconSuite / AmpliconRepository

Website to host AmpliconSuite outputs, including AA outputs and resulting focal amplification classifications, such as ecDNA.
https://AmpliconRepository.org
BSD 3-Clause "New" or "Revised" License
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Sample name explanation #297

Open louay930 opened 2 months ago

louay930 commented 2 months ago

For analysis purposes, i would like to understand the meaning and abbreviations behind the codes in sample names. Apart from the 4 or 5 first parts that are based on the TCGA project coding, i could not find the meaning of the remaining part such as: "A13U-02_MN_10A-01D-A13U"

jluebeck commented 1 month ago

Hi, the second part of the sample name refers to the sample which was used as a matched normal during the CNV seeding stage.

Please let me know if there are more questions about the naming, thanks! Jens