Code for parsing a _cycles.txt file from AA and formatting as .bedpe

AmpliconSuite / AmpliconSuite-pipeline

A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

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Code for parsing a _cycles.txt file from AA and formatting as .bedpe #15

Closed auberginekenobi closed 2 years ago

auberginekenobi commented 3 years ago

Missing a few things:

Command line interface
Only reads the first cycle.
Color by strand orientation Still, better than nothing. Useful for visualizing graphs as .bedpe.