Analysis of long-read sequencing data

AmpliconSuite / AmpliconSuite-pipeline

A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

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Analysis of long-read sequencing data #68

Open stephchid opened 1 month ago

stephchid commented 1 month ago

It looks like this set of analysis tools is set up for analyzing paired-end sequencing data. Is it also possible to analyze long read data (ONT, PacBio), which aren't in paired-end format?

jluebeck commented 1 month ago

Hi, thanks for this question - yes, we have a long read based method, CoRAL that is the analogous version of AA for long reads. Currently it is only for Oxford Nanopore (ONT) data, but we intend to expand capabilities for Pac-Bio as well in future updates.