Open auberginekenobi opened 2 months ago
Hi, I have encountered problems in installing the packages from the requirement.txt file.
I have solved it with the commands listed on the link: https://github.com/etal/cnvkit/issues/890
pip uninstall cython numpy -y
pip install cython==0.29.17 numpy==1.26.4 -y
git clone -b v0.14.9 --single-branch https://github.com/tiwalayo/pomegranate.git
pip install -e pomegranate/
Hi team, exciting work! I'd like to suggest including instructions for installing dependencies with conda/mamba instead of pip. This circumvents 2 issues I encountered during installation:
grbgetkey
utility is included in thegurobi
package onconda
but not thegurobipy
package onpip
. This utility seems to be required to install a gurobi license. See also https://support.gurobi.com/hc/en-us/articles/360044290292-How-do-I-install-Gurobi-for-Python .conda/mamba
can install thebioconductor-dnacopy
dependency.The only code change would be in the requirements.txt file:
N.B. that the following channels are required: