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Amshaker / unetr_plus_plus

[IEEE TMI-2024] UNETR++: Delving into Efficient and Accurate 3D Medical Image Segmentation
Apache License 2.0
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How to get the preprocessed BTCV dataset? #23

Open lphilomena opened 1 year ago

lphilomena commented 1 year ago

Many thanks for the great work! Could you please share the preprocessed BTCV dataset as those for the synapse and acdc datasets?

Amshaker commented 1 year ago

Hi @lphilomena,

I appreciate your interest in our work.

Please note that the preprocessed BTCV dataset is the same as Synapse we already shared. You will find that we shared preprocessed 30 samples. The difference is that Synapse has 18 training samples and 12 validation samples considering only 8 organs, while BTCV has 24 training samples and 6 validation samples considering all organs.

To train or evaluate our model on BTCV, you have to download this json file and train the same model of Synapse. After that, to get the results from the leaderboard, you have to register in Multi-Atlas Labeling Beyond the Cranial Vault - Workshop and Challenge and submit your predictions to the server.

I hope it is clear now.

Best regards.

lphilomena commented 1 year ago

Hi，@Amshaker，

Thank you very much for your clear reply. It is quite helpful!

Best regards,

smanman commented 1 year ago

@Amshaker Excuse me, can you provide BTCV training and testing datasets? How is 24/6 divided?