Closed gsanou closed 1 year ago
Hello @gsanou, please attach the code you used.
Moreover, be advised that the error you are getting is because you do not have installed PyKEEN
; admittedly, it should be handled better, and I'll look into it.
Secondly, the FutureWarning error you see is a sklearn one, independent from 🍇.
I have tested now on COLAB the following:
First, I install 🍇 and PyKEEN:
! pip install grape pykeen -Uq
and then I run the one-liner:
from grape import GraphVisualizer
GraphVisualizer("Cora", repository="linqs")\
.fit_and_plot_all("HolE")
And you get:
I hope everything is clear.
Thank you @LucaCappelletti94 . I think it was pykeen problem. i will close it. Gaoussou
Hello, Thanks you for your amaeing work, i'm a phD student working on the embeddings of biomedical data particularly in immunogenetics, and currently i'm comparing tools to embed data. I found your works very interesting. I got some issues when i try to use external model from pykeen and karateclub. i got this message :
ValueError: We have found an useless method in the class StubClass, implementing method HolE from library PyKEEN and task Node Embedding. It does not make sense to implement the `requires_positive_edge_weights` method when the `can_use_edge_weights` always returns False, as it is already handled in the root abstract model class.
Also for the vizualisation, when i did ``` from grape import GraphVisualizer visualizer = GraphVisualizer(kg.remove_disconnected_nodes()) visualizer.fit_and_plot_all(embedding)