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AnantharamanLab / METABOLIC

A scalable high-throughput metabolic and biogeochemical functional trait profiler
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help #117

Open duqiyao opened 1 year ago

duqiyao commented 1 year ago

Hello! I have some problems running metabolic soft, I can get diagrams of element cycles, but there are no output Metabolic_Sankey_diagram.pdf, Functional_network.pdf,Could you please take a look? code: nohup perl /data/software/METABOLIC/METABOLIC-C.pl -in-gn /data/home-baiyd/duqiyao/core_virus_host/ -r /data/home-baiyd/duqiyao/path.txt -o metabolic-out/out & my file: image image result: nohup.out.txt

ChaoLab commented 1 year ago

Hi, first it is suggested to only alphanumeric characters and underscores in the file names. And I also saw some errors in the nohup.out file showing "metabolic-out/out/sambamba_tmpfiles’: No space left on device". Is it because your server is out of space?

duqiyao commented 1 year ago

Dear teacher, thank you for your reply. After modifying the format as you said, I ran it again, but there was still something wrong. I searched the website but could not find the relevant solution

------------------ 原始邮件 ------------------ 发件人: "AnantharamanLab/METABOLIC" @.>; 发送时间: 2022年12月6日(星期二) 上午10:55 @.>; @.**@.>; 主题: Re: [AnantharamanLab/METABOLIC] help (Issue #117)

Hi, first it is suggested to only alphanumeric characters and underscores in the file names. And I also saw some errors in the nohup.out file showing "metabolic-out/out/sambamba_tmpfiles’: No space left on device". Is it because your server is out of space?

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ChaoLab commented 1 year ago

Can you post the nohup.out.txt again?

duqiyao commented 1 year ago

Dear teacher, thank you for your quick reply. I have started the operation again, and I have sent the result in the attachment. Please help to check it, thank you

------------------ 原始邮件 ------------------ 发件人: "AnantharamanLab/METABOLIC" @.>; 发送时间: 2022年12月7日(星期三) 凌晨3:57 @.>; @.**@.>; 主题: Re: [AnantharamanLab/METABOLIC] help (Issue #117)

Can you post the nohup.out.txt again?

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