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AnantharamanLab / METABOLIC

A scalable high-throughput metabolic and biogeochemical functional trait profiler
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The reasons fro 'mv: cannot stat 'METABOLIC_result.xlsx': No such file or directory' #123

Open haihao999 opened 1 year ago

haihao999 commented 1 year ago

Hi,Chao Can you help me explain the reason for this? 'mv: cannot stat 'METABOLIC_result.xlsx': No such file or directory'

[2023-02-07 16:36:56] The hmmsearch is running with 40 cpu threads... [2023-02-07 16:42:10] The hmmsearch is finished [2023-02-07 16:42:12] Generating each hmm faa collection... [2023-02-07 16:42:12] Each hmm faa collection has been made23-02-07 16:42:12] The KEGG module result is calculating... [2023-02-07 16:45:49] The KEGG identifier (KO id) result is calculating... [2023-02-07 16:45:50] The KEGG identifier (KO id) seaching result is finished [2023-02-07 16:45:50] Searching CAZymes by dbCAN2... [2023-02-07 16:49:39] dbCAN2 searching is done [2023-02-07 16:49:39] Searching MEROPS peptidase... [2023-02-07 16:52:00] MEROPS peptidase searching is done mv: cannot stat 'METABOLIC_result.xlsx': No such file or directory [2023-02-07 16:52:01] METABOLIC table has been generated [2023-02-07 16:52:01] Drawing element cycling diagrams...

ChaoLab commented 1 year ago

It means that 'METABOLIC_result.xlsx' has not been successfully made. Are there any correct outputs generated in the folder of 'METABOLIC_result_each_spreadsheet'?

haihao999 commented 1 year ago

Hi，zhichao The files in the folder are correct，and each file has the correct content. 88K Feb 7 21:20 METABOLIC_result_worksheet1.tsv 8.0K Feb 7 21:20 METABOLIC_result_worksheet2.tsv 45K Feb 7 21:23 METABOLIC_result_worksheet3.tsv 243K Feb 7 21:23 METABOLIC_result_worksheet4.tsv 427 Feb 7 21:28 METABOLIC_result_worksheet5.tsv 1.9K Feb 7 21:30 METABOLIC_result_worksheet6.tsv

ChaoLab commented 1 year ago

The 'excel' file is based on these six 'tsv' files. The final excel will contain six worksheets that each correspond to a 'tsv' file. It is strange to see the final 'excel' file does not exist. Maybe there is something wrong with the conda R environment