AnantharamanLab / VIBRANT

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One-liner conda setup [.yaml file] #75

Open erfanshekarriz opened 1 year ago

erfanshekarriz commented 1 year ago

Hi and hope all is well.

I was wondering if you have considered making a one-liner setup with conda. Either through adding dependencies like pickle-mixin or making a .yaml file that can be easily run with conda env create -f .yaml.

Adding the dependencies line-by-line in the README.md file makes it quite clunky as a developer who would like to use VIBRANT in my workflow process.

Would appreciate your help,

Best,

Erfan

KrisKieft commented 1 year ago

conda create -n vibrant -c bioconda prodigal hmmer biopython pandas matplotlib seaborn==0.9.0 numpy==1.17.0 scikit-learn==0.21.3