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AnantharamanLab / VIBRANT

Virus Identification By iteRative ANnoTation
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Scikit-learn version issue: suggestion #81

Open ellasiera opened 1 year ago

ellasiera commented 1 year ago

There seem to be several issues related to VIBRANT_setup.ph errors due to installing a wrong version of scikit-learn and python 3.8. Right now the error refers to installing a scikit version lower than 0.21.3, when the actual error usually occurs when installing higher versions, which is confusing. Could you just change the error message to reflect that?

TaekgeunLee1 commented 11 months ago

I have same error! Did you solve this problem?

ellasiera commented 11 months ago

I have same error! Did you solve this problem?

Sorry, I didn't

KrisKieft commented 11 months ago

Hi, yes this just seems to be a reporting issue when verifying the version of scikit-learn. I'd suggested installing the version listed in the README.

lynnetea commented 6 months ago

Did this work for anyone? I have the following message in the log from the -test:

VIBRANT Caution: running a version of Scikit-Learn lower than v0.21.3 will likely cause issues. With pip you can update by running "pip install --upgrade scikit-learn==0.21.3".

I have an updated version of scikit-learn (from conda list): scikit-learn 1.3.2 py311ha25ca4d_2 conda-forge

Please help. I have no idea how to solve this.