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AnantharamanLab / VIBRANT

Virus Identification By iteRative ANnoTation
GNU General Public License v3.0
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VIBRANT error: could not identify VIBRANT_categories.tsv in files directory. #86

Open AndAvia opened 7 months ago

AndAvia commented 7 months ago

First of all, thank you for creating such a great software, I used bioconda installation and successfully ran the code: python VIBRANT_setup.py -test and saw: VIBRANT v1.2.1 is good to go! See example_data/ for quick test files. But when I run python3 VIBRANT_run.py -i example_data/mixed_example.fasta -folder ~/result -d ~/miniconda3/envs/databases, VIBRANT_log_run_mixed _example.log log with the following error VIBRANT error: could not identify VIBRANT_categories.tsv in files directory. however I am sure I have the file in my database. However, I am sure I have the file in my database and chmod 777 changed the permissions. Looking forward to your answers to the questions.

AndAvia commented 7 months ago

Resolved and running successfully

0522keyi commented 7 months ago

Resolved and running successfully

Excuse me, can I ask you how you solved this problem？

AndAvia commented 7 months ago

Resolved and running successfully

Excuse me, can I ask you how you solved this problem？ From https://codeload.github.com/AnantharamanLab/VIBRANT/zip/refs/heads/master Copy the files folder, the scripts folder, the VIBRANT_run.py file, and the VIBRANT_setup.py file from the downloaded zip to your database, and when you encounter a "license denied" during the run, feel free to sudo chmod -R 777 filename

0522keyi commented 7 months ago

Resolved and running successfully

Excuse me, can I ask you how you solved this problem？ From https://codeload.github.com/AnantharamanLab/VIBRANT/zip/refs/heads/master Copy the files folder, the scripts folder, the VIBRANT_run.py file, and the VIBRANT_setup.py file from the downloaded zip to your database, and when you encounter a "license denied" during the run, feel free to sudo chmod -R 777 filename

Thank you very much for your answer! I've been able to run my tasks.