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AnantharamanLab / VIBRANT

Virus Identification By iteRative ANnoTation
GNU General Public License v3.0
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VIBRANT error ouputfile #97

Open Xuyang-Feng opened 3 months ago

Xuyang-Feng commented 3 months ago

Hi,

when I used vibrant for viral-contig identification, I found that the output files' name is not the same as the README.DOC described. Here are the names of my output: (5000_VOTU_four-orf-count.txt, 5000_VOTU.parallel-runs_aa.faa, 5000_VOTU.parallel-runs_aa.fna, 5000_VOTU.parallel-runs_aa.temp, 5000_VOTU.parallel-runs.txt, VIBRANT_log_5000_VOTU.log).

This is the work.sh I used to run vibrant: conda activate bioenv3.9 python VIBRANT_run.py -i $path/Pre_test/5000_VOTU.fa

When I ran the work.sh, there were no error being reported, but the output file was totally different from the README.DOC. I want to know how I could solve this problem.

Thank you very much.

KrisKieft commented 2 weeks ago

What your seeing are intermediate files and your run likely had an error but unfortunately didn't report anything. I highly suggest installing from GitHub instead of conda to see if that solves the issue. A simialr thing has been reported before.