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AnantharamanLab / vClassifier

Species-level taxonomic classification of viruses
GNU General Public License v3.0
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Question about Taxa File #2

Open Sanrrone opened 4 months ago

Sanrrone commented 4 months ago

Dears, Along with greeting you, I am trying to run the software. However, I cannot find the taxa file needed. the description says:

-l File containing the taxa of input nucleotide sequences. The first column should contain the list of query IDs, and the second column should contain the taxon list at the family level

how can I generate the file?

thanks in advance!

KunUW commented 3 weeks ago

Hi,

Sorry for the delayed response. ​We have provided an example file on GitHub for your reference.​ This file can be found at example_data/examples_of_viral_genomes_that_include_family_information/query_family. In this file, the first column contains the IDs of the query sequences, while the second column lists their corresponding family information.

If your sequences do not have family information, you can generate the taxonomic data using other tools, such as geNomad. Once you have obtained the results from these tools, please format them to match the structure of the example file.