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AnantharamanLab / vRhyme

Binning Virus Genomes from Metagenomes
GNU General Public License v3.0
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question about using vRhyme #25

Open liucong2016 opened 1 year ago

liucong2016 commented 1 year ago

when i start to run the commond "(vRhyme) nohup vRhyme -i /home/liu-c/virus-data/tuanjuti-virome/virus_detect-23.7.27/virus-final-23.8.2.fa -g /home/liu-c/virus-data/tuanjuti-virome/virus_detect-23.7.27/virus-final-23.8.2.ffn -p /home/liu-c/virus-data/tuanjuti-virome/virus_detect-23.7.27/virus-final-23.8.2.faa -r /home/liu-c/virus-data/tuanjuti-virome/cleandata-virus/virus-cleandata-sequence/clean-reads/*.fq -t 40 -o out-23.8.27 --method longest" and then i met the error:

softwarel/envs/vRhyme/bin/vRhyme:16: Deprecationwarning!etuptools.pypa.io/en/latest/pkg resources .htmlimport pkg resourcesTraceback (most recent cal last):File "/software1/envs/vRhyme/bin/vRhyme", line 160，in from scripts import save dist dicts as info'save dist dicts' from 'scripts' (unknown location)mportError:cannot import name ttbs! During handling of the aboveexception, another exception occurred: raceback (most recent call last):File "/software1/envs/vRhyme/bin/vRhyme"，line 177，in import machine stuffFile "/softwarel/envs/vRhyme/bin/machine stuff.py", line 10,infrom numba import jitFile "/softwarel/envs/vRhyme/lib/python3.10/site-packages/numba/ init.py", line 55,in ensure critical deps()File "/softwarel/envs/vRhyme/lib/python3.10/site-packages/numba/ init .py"，line 42, inensure critical depsraise ImportError("Numba needs NumPy 1.24 or less")mportError: Numba needs NumPy 1.24 or less nohup. out

but i notice the Numba version is right for request. i have no idea where is wrong.

KrisKieft commented 10 months ago

Did you try installing numpy v1.24 or less?