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AnantharamanLab / vRhyme

Binning Virus Genomes from Metagenomes
GNU General Public License v3.0
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How to concatenate the contigs of vMAGs into a single sequence #7

Closed mijiandui closed 2 years ago

mijiandui commented 2 years ago

Thanks a lot for your excellent software. However, how to concatenate the contigs of vMAGs into a single sequence? That is important for the next analysis. Could you help me.

Thanks a lot.

i found a script in the vrhyme to combine the contigs to a single sequence:

link_bin_sequences.py: link scaffolds within a bin to generate a single sequence per bin. This may be useful for CheckV input. Note that after linking scaffolds, if Prodigal is used to predict open reading frames the Prodigal -m flag should be used.