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AndersenLab / VCF-kit

VCF-kit: Assorted utilities for the variant call format
http://www.andersenlab.org
MIT License
122 stars 25 forks source link

problems with PyFPE #13

Open lroma84 opened 6 years ago

lroma84 commented 6 years ago

I have some problems using vk phylo software. I installed all the dependencies and I have this error: Traceback (most recent call last): File "/home/luca/miniconda2/bin/vk", line 7, in from vcfkit.vk import main File "/home/luca/miniconda2/lib/python2.7/site-packages/vcfkit/vk.py", line 27, in from utils.vcf import * File "/home/luca/miniconda2/lib/python2.7/site-packages/vcfkit/utils/vcf.py", line 1, in from cyvcf2 import VCF as cyvcf2 File "/home/luca/miniconda2/lib/python2.7/cyvcf2/init.py", line 1, in from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, ImportError: /home/luca/miniconda2/lib/python2.7/cyvcf2/cyvcf2.so: undefined symbol: PyFPE_jbuf Can you help me? Thank you very much in advance Luca

danielecook commented 6 years ago

Can you try:

pip install cython --upgrade
pip install cyvcf2 --upgrade

?

danielecook commented 5 years ago

Did this work for you?