AndersenLab / VCF-kit

VCF-kit: Assorted utilities for the variant call format
http://www.andersenlab.org
MIT License
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The 'VCF-kit==0.1.6' distribution was not found and is required by the application #21

Open DallasThomas opened 5 years ago

DallasThomas commented 5 years ago

Hello,

I have been trying to install for the past couple of days. The first few errors dealt with ascii code issues, and a couple missing dev libraries. I was finally able to get cyvcf2 to install and then VCF-kit installed successfully using pip.

Trying to test the install I am getting the following output:

Traceback (most recent call last): File "/usr/bin/vk", line 6, in from pkg_resources import load_entry_point File "/usr/local/lib/python2.7/dist-packages/pkg_resources/init.py", line 3138, in @_call_aside File "/usr/local/lib/python2.7/dist-packages/pkg_resources/init.py", line 3122, in _call_aside f(*args, **kwargs) File "/usr/local/lib/python2.7/dist-packages/pkg_resources/init.py", line 3151, in _initialize_master_working_set working_set = WorkingSet._build_master() File "/usr/local/lib/python2.7/dist-packages/pkg_resources/init.py", line 664, in _build_master ws.require(requires) File "/usr/local/lib/python2.7/dist-packages/pkg_resources/init.py", line 981, in require needed = self.resolve(parse_requirements(requirements)) File "/usr/local/lib/python2.7/dist-packages/pkg_resources/init.py", line 867, in resolve raise DistributionNotFound(req, requirers) pkg_resources.DistributionNotFound: The 'VCF-kit==0.1.6' distribution was not found and is required by the application

First thought would be something is not mapping properly or there was a missing sym-link. Time to take a break from this and come back with fresh eyes.

danielecook commented 5 years ago

Hi @DallasThomas - I'm sorry I missed this. Were you able to figure this out?

My recommendation is that for the time being you use anaconda to install.

DallasThomas commented 5 years ago

No I never did get this worked out and have been so busy with other things this has been on hold.