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AndersenLab / VCF-kit

VCF-kit: Assorted utilities for the variant call format
http://www.andersenlab.org
MIT License
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vcf2tsv error #27

Closed boboppie closed 3 years ago

boboppie commented 4 years ago

Dear @danielecook ,

I'm having an error when running vcf2tsv, my command:

vk vcf2tsv wide file.vcf

Error message:

Traceback (most recent call last): File "lib/python2.7/site-packages/vcfkit/vcf2tsv.py", line 83, in comm = Popen(comm, stdout=PIPE, stderr=PIPE) File "lib/python2.7/subprocess.py", line 394, in init errread, errwrite) File "lib/python2.7/subprocess.py", line 1047, in _execute_child raise child_exception OSError: [Errno 2] No such file or directory

danielecook commented 4 years ago

@boboppie not sure what is going on here. Do you have any additional info about that file.vcf?