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AndersenLab / VCF-kit

VCF-kit: Assorted utilities for the variant call format
http://www.andersenlab.org
MIT License
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TypeError: '<' not supported between instances of 'int' and 'NoneType' #40

Open selasphoruskershaw opened 3 years ago

selasphoruskershaw commented 3 years ago

Hi,

I am trying to run Tajima's D in vcf-kit using the following command: docker run -it andersenlab/vcf-kit vk tajima 10000 --sliding file.vcf

However, I receive the following set of error messages immediately: Traceback (most recent call last): File "/opt/conda/envs/vcf-kit/lib/python3.7/site-packages/vcfkit/tajima.py", line 148, in main() File "/opt/conda/envs/vcf-kit/lib/python3.7/site-packages/vcfkit/tajima.py", line 129, in main if wz < sz: TypeError: '<' not supported between instances of 'int' and 'NoneType'

I have tried different vcf files to see if that might have been the problem, but I get the same error message regardless. I am running Python version 3.6.13 in Terminal in Mac BigSur. What can I do to fix this? Thanks for your help!