Memory Issues when running tajima module

AndersenLab / VCF-kit

VCF-kit: Assorted utilities for the variant call format

http://www.andersenlab.org

MIT License

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Memory Issues when running tajima module #42

Open mwersebe opened 2 years ago

mwersebe commented 2 years ago

I am running vcf-kit (version 0.2.6) from a anaconda installation. I am trying to run the tajima module using the following command: vk tajima 10000 10000 chromosme.vcf.gz > chromosome_td.tsv

Each time I run the command, it runs for a few minutes but quickly consumes a lot of RAM before quitting. Curious if you know how to prevent this?

Thanks!