I've tried running the docker image of vk primer, but so far without success. I keep getting the error in the title.
The command I use is:
docker run -it --rm -v $PWD:/data -v $PWD/home:/root/.genome andersenlab/vcf-kit vk primer snip --ref=./data/home/ref_genome_dir ./data/calls.vcf.gz
I've read multiple issues about this error, but so far none help my case. Due to the structure of my project I need to use the vcfkit docker image and can't download it with conda. Are there any other fixes I can try?
If you need additional information, please let me know.
Hi,
I've tried running the docker image of vk primer, but so far without success. I keep getting the error in the title. The command I use is:
docker run -it --rm -v $PWD:/data -v $PWD/home:/root/.genome andersenlab/vcf-kit vk primer snip --ref=./data/home/ref_genome_dir ./data/calls.vcf.gzI've read multiple issues about this error, but so far none help my case. Due to the structure of my project I need to use the vcfkit docker image and can't download it with conda. Are there any other fixes I can try? If you need additional information, please let me know.
Thanks in advance, Thom