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AndersenLab / VCF-kit

VCF-kit: Assorted utilities for the variant call format
http://www.andersenlab.org
MIT License
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Problem install VCF-kit #8

Closed CristianRiccio closed 7 years ago

CristianRiccio commented 7 years ago

Hi, I am trying to install your tool.

source activate python2env pip install yahmm brew install bwa samtools bcftools blast muscle pip install VCF-kit

Then, I try this:

(python2env) ➜ ~ vk genome --help Traceback (most recent call last): File "/Users/cr517/anaconda/bin/vk", line 7, in from vcfkit.vk import main File "/Users/cr517/anaconda/lib/python3.6/site-packages/vcfkit/vk.py", line 24, in from utils import lev, message ImportError: cannot import name 'lev'

If you get the chance, I would appreciate your help.

Best,

Cristian.

danielecook commented 7 years ago

Hi Cristian - I apologize for the delay.

VCF-kit is designed to work with python2.7 for now. It looks like you are running it using python 3.6:

File "/Users/cr517/anaconda/lib/_____python3.6_____/site-packages/vcfkit/vk.py", line 24, in

I want to make it compatible with 3.6 eventually.