vk calc syntax error - Githubissues

AndersenLab / VCF-kit

VCF-kit: Assorted utilities for the variant call format

http://www.andersenlab.org

MIT License

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vk calc syntax error #9

Closed asherichia closed 6 years ago

asherichia commented 7 years ago

Hi, I run the following command:

vk calc genotypes snps_all.vcf

But then I end up with the following error:

File "/usr/local/lib/python2.7/dist-packages/vcfkit/calc.py", line 45 print "\t".join(["sample", "freq_of_gt", "n_gt_at_freq"]) ^ SyntaxError: invalid syntax

Not sure if a simple fix that I'm just missing?

danielecook commented 7 years ago

I'm not sure why this is happening. Can you provide the raw file or a sample?