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AndersenLab
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alignment-nf
A nextflow pipeline for genome sequences alignment
MIT License
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Change from conda to docker image
#23
katiesevans
closed
2 years ago
0
add npr1 check
#22
katiesevans
closed
2 years ago
0
blobtools running
#21
katiesevans
closed
3 years ago
0
add coverage report
#20
katiesevans
closed
3 years ago
0
Add species option
#19
danrlu
closed
4 years ago
0
Integrate genomes-nf reference
#18
danielecook
opened
4 years ago
0
Add validation step
#17
danrlu
closed
4 years ago
1
Report for alignment stats
#16
danrlu
closed
4 years ago
0
Added new samples to sample sheet
#15
danrlu
closed
4 years ago
0
processes in module triples submission
#14
danrlu
closed
4 years ago
2
Add new sequence data to sample sheet
#13
danielecook
closed
4 years ago
1
Test on Quest
#12
danielecook
closed
4 years ago
2
Restructure
#11
danielecook
closed
4 years ago
0
Integrate PD1074
#10
danielecook
closed
4 years ago
1
Create an 'alignment report' that summarizes the alignment step
#9
danielecook
closed
4 years ago
1
Add script for publishing new releases
#8
danielecook
closed
4 years ago
0
Review wi-nf for additional elements to add
#7
danielecook
closed
4 years ago
0
Restructure
#6
danielecook
closed
4 years ago
0
test run is ok; suggestions for conda
#5
danrlu
closed
4 years ago
1
add bam-summary.tsv
#4
danielecook
closed
4 years ago
1
update labels
#3
danielecook
closed
4 years ago
1
update tools based on prev. benchmarks
#2
danielecook
closed
4 years ago
0
add `when` condition to only process strains when no bam exists?
#1
danielecook
closed
4 years ago
1