AndersenLab / cegwas2-nf

GWA mapping with C. elegans
MIT License
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add STR variants #16

Open tcrombie opened 5 years ago

tcrombie commented 5 years ago

Add bi-allelic genotype matrix for STR variants. A first pass would be to filter STRs to those that are bi-allelic and wait on incorporation of multi-allelic STRs.

Because STRs are not all bi-allelic we will eventually need to devise a way of incorporating multi-allelic sites. I have not investigated possibilities for doing statistical tests using a multi - allelic matrix.