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easyfulcrum
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Add flag_geno_s_labels_not_in_fulcrum #24

Closed tcrombie closed 4 years ago

tcrombie commented 4 years ago

Add flag_geno_s_labels_not_in_fulcrum to the procGenotypes and checkGenotypes functions. There are many cases in the 2020FebruaryAustralia collection with no s-labels in the genotyping sheet.

tcrombie commented 4 years ago

Flag added to checkGenotypes only. 

 # Make a dataframe for s_labels in Fulcrum but not in the genotyping sheet
  s_label_in_geno_not_in_fulcrum <- fulc_data %>%
    dplyr::filter(!is.na(s_label)) %>%
    dplyr::filter(!(s_label %in% geno_data$s_label))
  print(paste("There are", nrow(s_label_in_geno_not_in_fulcrum), "s labels in the fulc_data not in the geno_data, these s labels are:", sep = " "))
  if(nrow(s_label_in_geno_not_in_fulcrum) > 0){print(s_label_in_geno_not_in_fulcrum$s_label)}
tcrombie commented 4 years ago

closing this issues and marking as done. Checked with 2020FebruaryAustralia dataset.