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AndersenLab / wi-gatk

The new GATK-based pipeline for wild isolate C. elegans strains
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fix annotation and channel operation #27

Open danrlu opened 3 years ago

danrlu commented 3 years ago
  1. as the size of vcf increases with more strains, may need to create a version of vcf without annotation.
  2. bcsq needs to be done after each time subsetting strains
  3. channel definition could be simplified in workflow