specimen_status in the cluster analysis wdl

AndrewLangvt / genomic_analyses

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Open PHemarajata opened 3 years ago

PHemarajata commented 3 years ago

Hi! I was wondering what type of input needs to be specified as specimen_status in the cluster analysis wdl. Thanks!

AndrewLangvt commented 3 years ago

It takes a CSV with 1st column being sampleID, and 2nd Pass/Fail. Example below.

sample_id,assembly_status Sample1,Pass Sample2,Fail Sample3,Pass

Let me know if that solves the issue for you.