This combines Evgeniya's snakefiles into one and extends them to also git clone chainsaw & merizo and install their dependencies. This works on my VSC installation, but ideally we should all test it out.
In the long-term, we might end up with dependencies between projects that are incompatible. That would be sad, but we could create separate virtual environments and handle that through snakemake. I'd like to avoid it, because it just means more storage for packages, but we'll see.
Closes #17
This combines Evgeniya's snakefiles into one and extends them to also git clone chainsaw & merizo and install their dependencies. This works on my VSC installation, but ideally we should all test it out.
In the long-term, we might end up with dependencies between projects that are incompatible. That would be sad, but we could create separate virtual environments and handle that through snakemake. I'd like to avoid it, because it just means more storage for packages, but we'll see.