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AngryMaciek / warlock

Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈
https://github.com/AngryMaciek/warlock
Apache License 2.0
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double-check final output of demon / linking #10

Closed AngryMaciek closed 2 years ago

AngryMaciek commented 2 years ago

Should we link by output.dat or maybe some other file? Or maybe we should create an artificial temp. file if and only if demon finished successfully, link rules by this file and then delete it? Or maybe incorporate a tempfile at the end of demon?

Ask Rob

AngryMaciek commented 2 years ago

@robjohnnoble : is there one main output file of demon one could consider as THE output? I am thinking of refactoring the rule' wiring...

AngryMaciek commented 2 years ago

@vesmanojlovic : maybe you'd know this as well? :)

vesmanojlovic commented 2 years ago

Was just about to post! All the output files contain slightly different information from each other so it really depends on the user which one they'd consider the main. However, I think output.dat gives the best summary. Will double-check this later today and update if I'm wrong.