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Anirban166 / Autocomment-atime-results

GitHub Action that automatically comments a plot and other atime-based results on PRs
https://github.com/marketplace/actions/autocomment-atime-results
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libgit2 and git2r not in good terms #39

Open Anirban166 opened 2 hours ago

Anirban166 commented 2 hours ago

Current workflow suddenly started resulting in:

* installing *source* package ‘git2r’ ...
** package ‘git2r’ successfully unpacked and MD5 sums checked
** using staged installation
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
configure: error: in '/tmp/RtmpaVPwMD/R.INSTALL164a478e4351/git2r':
checking whether the libgit2 version will work in git2r... no
configure: error: package dependency requirement 'libgit2 >= 1.0' could not be satisfied.

See 'config.log' for more details
  -----------------------------------------------------------------------

   Configuration failed to find libgit2 library. Try installing:
     * brew: libgit2 (MacOS)
     * deb: libgit2-dev   (Debian, Ubuntu, etc)
     * rpm: libgit2-devel (Fedora, CentOS, RHEL)
   and try again.

   If the libgit2 library is installed on your system but the git2r
   configuration is unable to find it, you can specify the include and
   lib path to libgit2 with:

   given you downloaded a tar-gz archive:
   R CMD INSTALL git2r-.tar.gz --configure-vars='INCLUDE_DIR=/path/to/include LIB_DIR=/path/to/lib'

   or cloned the GitHub git2r repository into a directory:
   R CMD INSTALL git2r/ --configure-vars='INCLUDE_DIR=/path/to/include LIB_DIR=/path/to/lib'

   or download and install git2r in R using
   install.packages('git2r', type='source', configure.vars='LIB_DIR=-L/path/to/libs INCLUDE_DIR=-I/path/to/headers')

  -----------------------------------------------------------------------

ERROR: configuration failed for package ‘git2r’
* removing ‘/__w/_temp/Library/git2r’

leading to:

ERROR: dependency ‘git2r’ is not available for package ‘atime’
* removing ‘/__w/_temp/Library/atime’

The downloaded source packages are in
    ‘/tmp/RtmpoQfIF7/downloaded_packages’
Warning messages:
1: In install.packages(c("atime", "ggplot2", "directlabels")) :
  installation of package ‘git2r’ had non-zero exit status
2: In install.packages(c("atime", "ggplot2", "directlabels")) :
  installation of package ‘atime’ had non-zero exit status
Error: Error in loadNamespace(x) : there is no package called ‘atime’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Error: Process completed with exit code 1.

Keeping in mind what the log above states, my two cents would be to first investigate if the cause is potentially:

Anirban166 commented 2 hours ago 
Run sudo add-apt-repository ppa:git-core/ppa
  sudo add-apt-repository ppa:git-core/ppa
  sudo apt-get update -y
  sudo apt-get install -y libgit2-dev
  dpkg -L libgit2-dev
  pkg-config --modversion libgit2
  shell: bash --noprofile --norc -e -o pipefail {0}
  env:
    GITHUB_PAT: ***
    repo_token: ***
    START_SETUP_TIME: 1730495637
    R_LIBS_USER: /__w/_temp/Library
    TZ: UTC
    _R_CHECK_SYSTEM_CLOCK_: FALSE
    NOT_CRAN: true
    RSPM: https://packagemanager.posit.co/cran/__linux__/focal/latest
    RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/__linux__/focal/latest
 The most current stable version of Git for Ubuntu.

For release candidates, go to https://launchpad.net/~git-core/+archive/candidate .
 More info: https://launchpad.net/~git-core/+archive/ubuntu/ppa
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Hit:6 http://ppa.launchpad.net/longsleep/golang-backports/ubuntu focal InRelease
Hit:7 http://archive.ubuntu.com/ubuntu focal-backports InRelease
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Reading package lists...
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Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev
  libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0
  libssh2-1 libssh2-1-dev
Suggested packages:
  libgcrypt20-doc libmbedtls-doc
The following NEW packages will be installed:
  libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev
  libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0
  libssh2-1 libssh2-1-dev
0 upgraded, 12 newly installed, 0 to remove and 5 not upgraded.
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Get:3 http://archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB]
Get:4 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB]
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Get:6 http://archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB]
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Get:12 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2ubuntu0.1 [692 kB]
debconf: unable to initialize frontend: Dialog
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/.
/usr
/usr/include
/usr/include/git2
/usr/include/git2/annotated_commit.h
/usr/include/git2/apply.h
/usr/include/git2/attr.h
/usr/include/git2/blame.h
/usr/include/git2/blob.h
/usr/include/git2/branch.h
/usr/include/git2/buffer.h
/usr/include/git2/checkout.h
/usr/include/git2/cherrypick.h
/usr/include/git2/clone.h
/usr/include/git2/commit.h
/usr/include/git2/common.h
/usr/include/git2/config.h
/usr/include/git2/cred_helpers.h
/usr/include/git2/deprecated.h
/usr/include/git2/describe.h
/usr/include/git2/diff.h
/usr/include/git2/errors.h
/usr/include/git2/filter.h
/usr/include/git2/global.h
/usr/include/git2/graph.h
/usr/include/git2/ignore.h
/usr/include/git2/index.h
/usr/include/git2/indexer.h
/usr/include/git2/inttypes.h
/usr/include/git2/mailmap.h
/usr/include/git2/merge.h
/usr/include/git2/message.h
/usr/include/git2/net.h
/usr/include/git2/notes.h
/usr/include/git2/object.h
/usr/include/git2/odb.h
/usr/include/git2/odb_backend.h
/usr/include/git2/oid.h
/usr/include/git2/oidarray.h
/usr/include/git2/pack.h
/usr/include/git2/patch.h
/usr/include/git2/pathspec.h
/usr/include/git2/proxy.h
/usr/include/git2/rebase.h
/usr/include/git2/refdb.h
/usr/include/git2/reflog.h
/usr/include/git2/refs.h
/usr/include/git2/refspec.h
/usr/include/git2/remote.h
/usr/include/git2/repository.h
/usr/include/git2/reset.h
/usr/include/git2/revert.h
/usr/include/git2/revparse.h
/usr/include/git2/revwalk.h
/usr/include/git2/signature.h
/usr/include/git2/stash.h
/usr/include/git2/status.h
/usr/include/git2/stdint.h
/usr/include/git2/strarray.h
/usr/include/git2/submodule.h
/usr/include/git2/sys
/usr/include/git2/sys/alloc.h
/usr/include/git2/sys/commit.h
/usr/include/git2/sys/config.h
/usr/include/git2/sys/diff.h
/usr/include/git2/sys/filter.h
/usr/include/git2/sys/hashsig.h
/usr/include/git2/sys/index.h
/usr/include/git2/sys/mempack.h
/usr/include/git2/sys/merge.h
/usr/include/git2/sys/odb_backend.h
/usr/include/git2/sys/openssl.h
/usr/include/git2/sys/path.h
/usr/include/git2/sys/refdb_backend.h
/usr/include/git2/sys/reflog.h
/usr/include/git2/sys/refs.h
/usr/include/git2/sys/repository.h
/usr/include/git2/sys/stream.h
/usr/include/git2/sys/time.h
/usr/include/git2/sys/transport.h
/usr/include/git2/tag.h
/usr/include/git2/trace.h
/usr/include/git2/transaction.h
/usr/include/git2/transport.h
/usr/include/git2/tree.h
/usr/include/git2/types.h
/usr/include/git2/version.h
/usr/include/git2/worktree.h
/usr/include/git2.h
/usr/lib
/usr/lib/x86_64-linux-gnu
/usr/lib/x86_64-linux-gnu/libgit2.a
/usr/lib/x86_64-linux-gnu/pkgconfig
/usr/lib/x86_64-linux-gnu/pkgconfig/libgit2.pc
/usr/share
/usr/share/doc
/usr/share/doc/libgit2-dev
/usr/share/doc/libgit2-dev/checkout-internals.md.gz
/usr/share/doc/libgit2-dev/code_of_conduct.md
/usr/share/doc/libgit2-dev/contributing.md.gz
/usr/share/doc/libgit2-dev/conventions.md.gz
/usr/share/doc/libgit2-dev/copyright
/usr/share/doc/libgit2-dev/diff-internals.md.gz
/usr/share/doc/libgit2-dev/differences-from-git.md
/usr/share/doc/libgit2-dev/error-handling.md.gz
/usr/share/doc/libgit2-dev/examples
/usr/share/doc/libgit2-dev/examples/CMakeLists.txt
/usr/share/doc/libgit2-dev/examples/COPYING
/usr/share/doc/libgit2-dev/examples/README.md
/usr/share/doc/libgit2-dev/examples/add.c
/usr/share/doc/libgit2-dev/examples/blame.c
/usr/share/doc/libgit2-dev/examples/cat-file.c
/usr/share/doc/libgit2-dev/examples/checkout.c
/usr/share/doc/libgit2-dev/examples/common.c
/usr/share/doc/libgit2-dev/examples/common.h
/usr/share/doc/libgit2-dev/examples/describe.c
/usr/share/doc/libgit2-dev/examples/diff.c
/usr/share/doc/libgit2-dev/examples/for-each-ref.c
/usr/share/doc/libgit2-dev/examples/general.c
/usr/share/doc/libgit2-dev/examples/init.c
/usr/share/doc/libgit2-dev/examples/log.c
/usr/share/doc/libgit2-dev/examples/ls-files.c
/usr/share/doc/libgit2-dev/examples/merge.c
/usr/share/doc/libgit2-dev/examples/network
/usr/share/doc/libgit2-dev/examples/network/Makefile
/usr/share/doc/libgit2-dev/examples/network/clone.c
/usr/share/doc/libgit2-dev/examples/network/common.c
/usr/share/doc/libgit2-dev/examples/network/common.h
/usr/share/doc/libgit2-dev/examples/network/fetch.c
/usr/share/doc/libgit2-dev/examples/network/git2.c
/usr/share/doc/libgit2-dev/examples/network/index-pack.c
/usr/share/doc/libgit2-dev/examples/network/ls-remote.c
/usr/share/doc/libgit2-dev/examples/remote.c
/usr/share/doc/libgit2-dev/examples/rev-list.c
/usr/share/doc/libgit2-dev/examples/rev-parse.c
/usr/share/doc/libgit2-dev/examples/showindex.c
/usr/share/doc/libgit2-dev/examples/status.c
/usr/share/doc/libgit2-dev/examples/tag.c
/usr/share/doc/libgit2-dev/examples/test
/usr/share/doc/libgit2-dev/examples/test/test-rev-list.sh
/usr/share/doc/libgit2-dev/fuzzing.md
/usr/share/doc/libgit2-dev/merge-df_conflicts.txt
/usr/share/doc/libgit2-dev/projects.md.gz
/usr/share/doc/libgit2-dev/release.md.gz
/usr/share/doc/libgit2-dev/threading.md.gz
/usr/share/doc/libgit2-dev/troubleshooting.md
/usr/lib/x86_64-linux-gnu/libgit2.so
/usr/share/doc/libgit2-dev/changelog.Debian.gz
0.28.4